Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05105 ATGATGGGTTTCTTTAGATTAGCAGTGTTCCTATTTTTCTTTCTGGGCACTGTTCATTCTACAGTTCTTGGGAGAGAAAATGCCGGCATCGTGAATGGAAAAAAATCACTTATTTCGTTCATGTCAAGCATTGTTTCAGACCCTCAAAACGCTCTAGATAGTTGGAAATCACCCGGTGTTCATGTTTGTGATTGGTCGGGTGTGAGATGCAACAATGCAAGTGACATGATCGTAGAGGTTGATCTCAGTGGAAGGTCTCTAGGAGGCACTATTTCCCCTGCTCTTGCTAACATCTCTTCCTTGCAAATTCTTGATCTTTCTGGGAACTTTTTGGTGGGTCAGATTCCAAAAGAAATAGGCCATTTGGTTCATCTCAGACAACTCAGTTTGTCTGGGAATTTTCTTGAGGGTCGCATTCCATCCGAGTTTGGTTCACTTCACAACTTGGATTACCTTAACTTAGGAAGCAATCATCTTGAGGGAGAGATACCCTCATCTCTCTTCTGCAATAGTACTTCACTTGGTTATGTAGACCTCTCTAACAATTCCTTAGTTGGCCAAATCCCTTTGAACAAAGATTGCATCCTTAAAGAACTAAAGTTCCTGTTACTCTGGTCTAACAAACTTGTCGGAAAAGTTCCTTTAGCTCTTTCAAACTCCACCAAGCTAAAATGGCTTGATCTGGGGTTGAATATGCTGAGTGGAGAGCTTCCTTCTGAGATTGTAAGTAATTGGCCACAACTACAATTCCTCTACCTGTCATACAACAATTTTACAAGCCATGATGGTAATACCAACCTTGAACCTTTCTTTGCCTCCTTGGTGAATTTATCTCACTTTCAAGAACTTGAATTGGCGGGAAATAATCTTGGTGGAAAGCTTCCTCACAGTATTGGTGATCTTCCTACCAGCCTGCAACAACTCCACCTTGAAAAGAATCTCATATATGGCCCTATACCTCCTCAAATTGCCAACCTTGTCAACCTGAATTTCTTGAAGATGTCTAGTAACCTGTTAAATGGATCAATCCCTCCCAGCCTCGGCCATATGAATAGGCTAGAAAGAATTTACTTGTCAAATAATTCACTTTCTGGTGAGATTCCTTCAACCCTTGGTGGCATTCAGCATCTGGGGCTTCTAGACTTGTCAAGAAACAAGCTTTCTGGTCCAATACCAGACAGTTTTGCAAATCTCCCCCAGTTGAGAAGGCTTTTACTTTATGACAACCAGCTTTCTGGAACAATCCCACCAAGTCTGGGAAAATGTGTCAATTTGGAGATTTTAGACTTGTCTCACAACAACATAACTGGGTTGATTCCTGCAGAAGTTGCAGCCTTGAGTAGCTTGAAACTATACCTGAATTTATCAAACAATAACTTGCATGGGTCTTTACCACTAAAACTCAGCAAAATGGACATGGTTCTAGCTATTGATTTATCCATGAATAACCTCTCTGGCAGCATCCCTCCACAGTTGGAAAGTTGCATAGCACTGGAGTATCTCAACCTCTCTGGTAACTCCTTTGAAGGCCCTCTCCCTTATTCATTAGGCCAATTGCTTTATATTAGAGCACTTGACGTGTCTTCAAATCAGTTAACTGGGGCAATACCACAGTCCATGCAGTTGTCTCCCTCTCTGAAGGAACTTAATTTCTCTTTCAACAGATTCTCAGGGAAAGTGTCAAACAAGGGAGCATTTTCAAATCTCACCATAGACTCTTTCCTGGGAAACGGTGCTCTCTGTGGCCCGTTTAAAGGCATGCAACAATGTCACAAGAAATGTAGTTATCATTTGGTGTTCTTGTTAATTCCCGTGTCACTATTTGGCACCCCTCTCCTATGCATACTTTTTAGGTACCCAATAGTAATGAAGTCAAGAGTGAAAAAACGAATTTCAATTGTTAGCAGAGGTGATTTTGAGGATGTAGAAGAGGGAGCAAAAGAGGTAAAGTACCCAAGAATCACGTATGAACAACTTAAAGAAGCCACTGGAGGGTTCAGTGCTACAAGCTTAATTGGTTCAGGCCGGTTTGGACAAGTCTACGAAGGAATGCTCCAAGATAATACAAGGGTAGCTGTGAAGGTGTTGGACACAACACATGGTGAGATTTCAAGGAGCTTTAGAAGGGAATGTCAAATACTGAAAAAGATAAGGCACAGAAATTTAATAAGGATCATAACAATCTGTTGCAGGCCAGAATTTAATGCTCTTGTTTTTCCCTTGATGCCAAATGGTAGCCTCGAGAGTCACCTATATCCAAGCCAAAGATTGAATGTGGTTCAACTAGTAAGAATCTGCAGTGATGTAGCTGAGGGAATGGCCTATCTGCACCATTACTCTCCAGTGAAAGTAGTGCATTGTGATCTCAAGCCAAGCAATATACTCCTTGATCAAGATATGACAGCTTTGGTCACTGATTTTGGAATTTCAAGGCTTGTACAAAGTGACGAGAACACATCCACCACTACCTCATCTTTCAGTTCAACACATGCTTTGCTATGTGGGTCTGTTGGTTACATAGCTCCAGAGTACGGAATGGGAAAAGATGCTTCAAGTGAGGGCGATGTTTACAGTTTTGGAGTGCTTGTGTTGGAGATGGTTTCAGGAAGACGCCCCACAGAAGTGGTGAGCCATGAAGGGTCAAGCTTGAGTGAGTGGCTTAAGAAACTATACACACAACCGCACCACCTTCAAAGCTTTGTTCAACAAACACTTCAAAGGTGTTATCCTTTTGGTGTGCCAAATCCTCAGAACAAAGTGTGGAGCGATGTTATTCTGGAACTCATTGAGCTGGGACTAATCTGCACTCAGCACAACCCTTCAACTAGACCAAGCATGCACGATATAGCACAAGAGATGGAGAGGTTAAAGGACTACCTCGCTAAGCCAACCTTCACCCGTCATTCAAGTCAATCCCAACATTAA 2925 0.4209 MMGFFRLAVFLFFFLGTVHSTVLGRENAGIVNGKKSLISFMSSIVSDPQNALDSWKSPGVHVCDWSGVRCNNASDMIVEVDLSGRSLGGTISPALANISSLQILDLSGNFLVGQIPKEIGHLVHLRQLSLSGNFLEGRIPSEFGSLHNLDYLNLGSNHLEGEIPSSLFCNSTSLGYVDLSNNSLVGQIPLNKDCILKELKFLLLWSNKLVGKVPLALSNSTKLKWLDLGLNMLSGELPSEIVSNWPQLQFLYLSYNNFTSHDGNTNLEPFFASLVNLSHFQELELAGNNLGGKLPHSIGDLPTSLQQLHLEKNLIYGPIPPQIANLVNLNFLKMSSNLLNGSIPPSLGHMNRLERIYLSNNSLSGEIPSTLGGIQHLGLLDLSRNKLSGPIPDSFANLPQLRRLLLYDNQLSGTIPPSLGKCVNLEILDLSHNNITGLIPAEVAALSSLKLYLNLSNNNLHGSLPLKLSKMDMVLAIDLSMNNLSGSIPPQLESCIALEYLNLSGNSFEGPLPYSLGQLLYIRALDVSSNQLTGAIPQSMQLSPSLKELNFSFNRFSGKVSNKGAFSNLTIDSFLGNGALCGPFKGMQQCHKKCSYHLVFLLIPVSLFGTPLLCILFRYPIVMKSRVKKRISIVSRGDFEDVEEGAKEVKYPRITYEQLKEATGGFSATSLIGSGRFGQVYEGMLQDNTRVAVKVLDTTHGEISRSFRRECQILKKIRHRNLIRIITICCRPEFNALVFPLMPNGSLESHLYPSQRLNVVQLVRICSDVAEGMAYLHHYSPVKVVHCDLKPSNILLDQDMTALVTDFGISRLVQSDENTSTTTSSFSSTHALLCGSVGYIAPEYGMGKDASSEGDVYSFGVLVLEMVSGRRPTEVVSHEGSSLSEWLKKLYTQPHHLQSFVQQTLQRCYPFGVPNPQNKVWSDVILELIELGLICTQHNPSTRPSMHDIAQEMERLKDYLAKPTFTRHSSQSQH 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05105 974 Gene3D Ribonuclease Inhibitor 195 593 IPR032675 -
Viun3g05105 974 Gene3D Phosphorylase Kinase; domain 1 645 740 - -
Viun3g05105 974 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 271 367 - -
Viun3g05105 974 ProSiteProfiles Leucine-rich repeat profile. 424 445 IPR001611 GO:0005515
Viun3g05105 974 SMART serkin_6 666 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05105 974 SUPERFAMILY L domain-like 325 582 - -
Viun3g05105 974 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672|GO:0006468
Viun3g05105 974 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 196 954 - -
Viun3g05105 974 Pfam Leucine Rich Repeat 124 146 IPR001611 GO:0005515
Viun3g05105 974 Pfam Leucine Rich Repeat 100 122 IPR001611 GO:0005515
Viun3g05105 974 Pfam Leucine Rich Repeat 424 442 IPR001611 GO:0005515
Viun3g05105 974 Pfam Leucine Rich Repeat 498 517 IPR001611 GO:0005515
Viun3g05105 974 SMART LRR_typ_2 326 350 IPR003591 -
Viun3g05105 974 SMART LRR_typ_2 98 121 IPR003591 -
Viun3g05105 974 SMART LRR_typ_2 122 145 IPR003591 -
Viun3g05105 974 SMART LRR_typ_2 277 301 IPR003591 -
Viun3g05105 974 SMART LRR_typ_2 146 170 IPR003591 -
Viun3g05105 974 SMART LRR_typ_2 398 422 IPR003591 -
Viun3g05105 974 SMART LRR_typ_2 374 397 IPR003591 -
Viun3g05105 974 SMART LRR_typ_2 423 445 IPR003591 -
Viun3g05105 974 SMART LRR_typ_2 446 471 IPR003591 -
Viun3g05105 974 SUPERFAMILY Protein kinase-like (PK-like) 648 953 IPR011009 -
Viun3g05105 974 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 31 194 - -
Viun3g05105 974 ProSitePatterns Protein kinases ATP-binding region signature. 672 694 IPR017441 GO:0005524
Viun3g05105 974 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
Viun3g05105 974 CDD STKc_IRAK 672 956 - -
Viun3g05105 974 ProSiteProfiles Protein kinase domain profile. 666 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05105 974 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 742 965 - -
Viun3g05105 974 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 379 594 - -
Viun3g05105 974 Pfam Protein kinase domain 669 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05105 974 SUPERFAMILY L domain-like 37 261 - -
Viun3g05105 974 Gene3D Transferase(Phosphotransferase) domain 1 742 970 - -
Viun3g05105 974 Gene3D Ribonuclease Inhibitor 32 194 IPR032675 -
Viun3g05105 974 Pfam Leucine rich repeat 352 411 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05105 Viun-Chr3 57656000 57659549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05105 35 972 Receptor kinase-like Gene Family AT5G20480 33.138 6.22e-157 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Viun3g05105 Pkinase 2.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05105 - - gmx:100792446 1646.33