Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05090 ATGGAAGCCAGCGCTGGACTGGTCGCTGGTTCTCACAATAGGAACGAGCTCGTTGTCATTCATGGCCATGAAGAGCACAAGCCTTTGAAGAACTTGGATGGGCAAGTGTGTGAGATATGTGGCGATGATGTGGGAGTGACGGTGGACGGAGATTTGTTTGTAGCATGCAATGAGTGTGGTTTTCCGGCGTGCCGACCGTGCTATGAGTATGAAAGAAGAGAAGGGAGACAAGTTTGTCCACAGTGCAAGACCAGATACAAGCGTCTTAAAGGTAGCCCACGGGTTGAGGGAGATGATGATGAGGAAGACGTGGATGATATCGAACATGAATTCAACATTGATGACCAAATGAACAAGCATAATCACTCTGCGGAGGCCATGCTGCATGGGAAGATGAGCTACGGAAGAGGTCCTGAAGATGAGGACAATTCTCAATTCCCAGCCGTTATTGCCGGTGGTCGTTCTCGCCCTGTCAGTGGAGAGTTGCCAATATCATCTCATTATGGGGAGCACCCTTCACTGCATAATCGTGTGCATCCTTATCCGGCATCTGATCCTAGGAATGGGAGATGGGATGAAAGCAAAGATGATAGAATGGATGACTGGAAGTTGCAACAAGGAAATTTGGGGCCTGAACCTGATGAAGATCCAGATGCAGCCATGTTGGATGAAGCAAGGCAACCACTGTCAAGGAAGATACCAATAGCATCCAGCAAAGTGAATCCGTATAGGATGGTGATCGTAGCACGGCTTGTTGTCCTTGCCTTCTTTCTCCGATATAGACTCATGAATCCTGTGCATGATGCACTGGGGCTGTGGCTAACATCTATTATATGTGAAATCTGGTTTGCTTTTTCATGGATTCTTGATCAGTTTCCCAAGTGGTTTCCCATTGATCGAGAGACCTACCTTGATCGTCTTTCAATAAGGTATGAGCGTGAAGGTGAACCAAACATGCTTGCTCCTGTAGATGTCTTTGTCAGTACTGTGGATCCCATGAAGGAACCTCCACTGGTTACAGCAAACACTGTTCTCTCGATCTTGGCCATGGATTACCCGGTTGAGAAGATATCATGTTACATTTCTGATGATGGAGCTTCAATGTGTACTTTTGAGTCCCTATCTGAAACTGCAGAGTTTGCTAGGAAGTGGGTACCATTCTGCAAGAAATTTTCTATCGAACCTCGGGCACCAGAGATGTACTTCTCTGAGAAAATTGATTACCTCAAGGACAAGGTGCAGCCCACCTTTGTCAAGGAGCGTCGAGCTATGAAGAGAGAATATGAAGAGTTTAAGGTAAGGATCAATGCACTTGTGGCAAAAGCTCAGAAGGTTCCACAGGGAGGATGGATTATGCAGGATGGAACACCATGGCCAGGAAACAATACGAAGGATCATCCTGGTATGATTCAAGTCTTTCTTGGTCACAGTGGAGGTCATGATACTGAAGGAAACGAGCTTCCTCGTCTTGTTTATGTTTCCAGAGAGAAAAGGCCAGGATTCCAGCACCACAAGAAAGCTGGGGCTATGAATGCTTTGATTCGGGTCTCTGCTGTGCTTACAAATGCTCCTTTCATGCTGAATTTGGATTGTGATCATTATGTCAATAACAGCAAAGCTGCTAGAGAGGCCATGTGTTTCTTAATGGACCCCCAAACTGGGAAGAAGGTCTGCTATGTCCAGTTTCCTCAAAGATTCGATGGCATTGATAGGCACGATCGTTATGCCAATAGGAACACAGTTTTCTTTGATATAAATATGAAGGGTCTAGATGGTATTCAGGGTCCTGCATATGTTGGTACTGGGTGTGTATTTAGGAGACAAGCTTTATACGGTTATAATCCTCCCAAGGGTACCAAACGTCCAAAAATGATAAGCTGTGACTGCTGCCCATGTTTTGGAAAGCGCAAGAAGGTTAAGTATGAAGGGAATGGTGCAGATGGAGAGGTTGCAACCCTAACAGGACCGGATGATGAAAAACAGATGTTGATGTCCCAGATGAATTTTGAGAAGAAATTTGGGCAGTCATCTATCTTTGTGACTTCAACCTTGATGGAAGAGGGTGGTGTGCCTCCTTCCTCAAGTCCAGCAAGCCAGCTTAAAGAAGCCATTCACGTAATCAGCTGTGGATATGAAGATAAAACTGAATGGGGAATTGAGCTGGGTTGGATTTATGGGTCTATTACAGAGGATATTCTAACAGGTTTTAAGATGCATTGCCGTGGTTGGAGGTCCATTTATTGCATGCCTAAGAGACCTGCATTCAAGGGTACTGCTCCCATCAACTTGTCTGATAGGCTTAACCAGGTGCTTCGTTGGGCACTTGGCTCCATTGAAATCTTCTTCAGTCGCCATTGTCCTTTATGGTATGGCTATAAGGAAGGGAAGTTGAAGTGGCTTGAGCGATTTGCGTATGCAAACACAACTGTCTACCCCTTCACCTCCATACCTCTAGTTGCCTACTGTGTCCTTCCTGCTGTCTGTTTGCTCACTGATAAATTCATCATGCCACCGATAAGCACTTTTGCGGGTTTGTACTTCGTTGCTCTATTCTCTTCAATCATTGCAACTGGTCTTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAGGAATGGTGGAGAAATGAGCAATTCTGGGTCATTGGTGGTGTGTCAGCTCATCTCTTTGCTGTCATACAAGGTCTTCTGAAGGTTTTGGCTGGAATTGACACTAACTTCACTGTTACATCAAAGGCAGCGGATGATGAAGAATTTGGAGAACTATACACCTTTAAGTGGACTACTCTCCTGATTCCTCCAACCACTATCCTAATAATCAATATTGTCGGCGTTGTTGCTGGAATCTCAGATGCCATAAACAATGGGTACCAATCCTGGGGACCTCTATTTGGAAAATTGTTCTTCTCATTTTGGGTGATTGTCCATCTGTATCCATTCCTTAAAGGTTTGATGGGTCGCCAAAACCGCACACCCACCATAGTTGTTATATGGTCGATACTGTTGGCTTCCATTTTCTCCTTGCTTTGGGTAAGAATTGATCCATTCGTATTAAAAACTAAGGGACCTGATACCAAGCTATGTGGAATCAACTGTTAA 3096 0.449 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDDVGVTVDGDLFVACNECGFPACRPCYEYERREGRQVCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIDDQMNKHNHSAEAMLHGKMSYGRGPEDEDNSQFPAVIAGGRSRPVSGELPISSHYGEHPSLHNRVHPYPASDPRNGRWDESKDDRMDDWKLQQGNLGPEPDEDPDAAMLDEARQPLSRKIPIASSKVNPYRMVIVARLVVLAFFLRYRLMNPVHDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVEKISCYISDDGASMCTFESLSETAEFARKWVPFCKKFSIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPQGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQTGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPAYVGTGCVFRRQALYGYNPPKGTKRPKMISCDCCPCFGKRKKVKYEGNGADGEVATLTGPDDEKQMLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPASQLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSRHCPLWYGYKEGKLKWLERFAYANTTVYPFTSIPLVAYCVLPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGLLELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEEFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSILLASIFSLLWVRIDPFVLKTKGPDTKLCGINC 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05090 1031 SUPERFAMILY RING/U-box 21 109 - -
Viun3g05090 1031 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Viun3g05090 1031 MobiDBLite consensus disorder prediction 131 197 - -
Viun3g05090 1031 CDD mRING-HC-C4C4_CesA 35 85 - -
Viun3g05090 1031 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 468 614 IPR029044 -
Viun3g05090 1031 FunFam Cellulose synthase 440 614 - -
Viun3g05090 1031 SUPERFAMILY Nucleotide-diphospho-sugar transferases 336 792 IPR029044 -
Viun3g05090 1031 FunFam Cellulose synthase 19 110 - -
Viun3g05090 1031 Pfam Cellulose synthase 323 1025 IPR005150 GO:0016020|GO:0016760|GO:0030244
Viun3g05090 1031 Coils Coil 421 441 - -
Viun3g05090 1031 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Viun3g05090 1031 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Viun3g05090 1031 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 226 998 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05090 Viun-Chr3 57573024 57578231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05090 1 1031 Cell Wall Biosynthesis AT5G17420 85.687 0.0 1833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05090 K10999 - gmx:100779834 2062.34