Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05087 ATGCAGCAGAGTGATCCGACGGTGTTGAGCTTGAGGCCCGGCGGTGGAAAAGGCAGCAGGCTCCTCGGCCCTCGATTCGACTCCTCCTCCTCGTCTTCTGCTTCCCCTGCTTTTGGCTCCTTTTCTGCTGATCTTCCTCTCCTGCGTCCTCATGGCGGGGCTCCCTCTCCCTTCTCTATCAAGGCTGGAGATTCCCGGTTTGAGGGTCGTGAGCGTGTGCGATATACCAGGGAGCAGCTCTTACAACTCAGTGAGGGTGTTGAGACCCTTGATGATGTTTTGAAGATCAAACAAGAATTTGAAGCTGAACTATTTGGTGAAGATCAAAGTTGGGCCCGCCCAGAAAGTAACCCCTCACATCAATTCCAAAATCGATATTCTGAGCCAGATAATCGTGACTGGCGTGGACGATCTGGCCAACAACCTTTTGGTAATGCAGATGAGAGGTCTTGGGATAATCTCAAGGAGAATAGGGAGTTTGGAAATAATCGTCAAGAGCAACTGAATTCTCAGTTTGCAAGGGCACAAATATCTTCTAACCAAGGGGGGGGACCTACTCCAACTCTAGTCAAGGCTGAGGTGCCATGGTCAGCTAGGAGGGGAACTCTCTCTGAAAAAGATCGTGTCTTAAAGACAGTTAAAGGAATACTAAATAAGTTGACTCCTGAGAAATTTGATCTCTTGAAGGGTCAGTTGATTGATTCTGGCATTACATCTGCCGACATATTGAAGGGAGTTATTTCACTAATATTTGATAAGGCAGTGCTAGAACCAACATTTTGCCCAATGTATGCCCAGCTATGTTCTGATCTTAATGAAAAGCTGCCTCCATTCCCATCTGATGAGCCTGGTGGGAAGGAAATCACTTTTAAGAGAGTGCTCTTGAATATCTGCCAGGAGGCTTTTGAAGGTGCAGATAACCTGAGGGAAGAAGTTAGACAGATGACTGCTCCTGAGCAGGAGATGGAGCGAAGGGATAAGGACAGACTTGTCAAGATTCGAACCCTTGGAAACATTCGTTTAATTGGTGAGCTATTGAAGCAAAAAATGGTTCCCGAAAAGATTGTTCATCACATTGTTCAGGAGCTTTTAGGTCCACAGGACAGCAAGGTCTGTCCAGCTGAGGAAAATGTTGAAGCCATATGTCAATTTTTCAACACTATTGGTAAGCAGCTTGATGAAAGCCCAAAATCACGGCGTATTAATGATATGTACTTCAGTCGTTTGAAAGAATTGAGCACCAATCCCCAACTTGTTCCACGGCTGCGGTTTATGGTTCGTGATGTTCTAGAGTTGCGTTCTAATAGCTGGGTTCCTAGACGTGAAGAGGTGAAAGCCAAAACCATCACTGAAATTCATTCAGAGGCAGAGAAAAATCTTGGATTGCGTCCCGGTGCCACTGCAAGTATGAGAAATAGCCGTGTAGTTTCTGGTGTTCAAGGAAACGCCAGTCAGGGAGGATTTCCTATTGCCCGACCTGGTACTGGTGGTATGATGCCTGGGATGCCGGGGACAAGGAGAATGCCTGGGATGCCTGGAATTGATAATGACAACTGGGAGGTGCCTAGGACAAGATCAATGCCGAGAGGTGACATGTCAGGCATGCAAGGTGGAGGACGTGGTCAGTCTCCTCTCATTTCTAAGACACCAACTGTTAACTCAAAGTTACTACCTCAAGGTAGTGGTGGTACTATAAGTGGGAGAAGCAGTGCCCTGGTGCATGGAGGTGGTGGTGCTCCTTCTGCTCGTCCATCAAACGTTGGTTTGAGTACCGAGCCCACACCTCAAATGCCTGCACCTGTTAAACCTGTTTCTGCCATACCCTCTGAGAAGCCACAAGCTTCAGCTCCAAAATCGAATGTTGAGGAACTTCAGCGTAAAACCAGTTCTCTTCTGGAAGAATATTTCAGTGTTCGACTTTTGGACGAAGCATTGCAGTGTGTGGAAGAACTAAAAGCTCCAGCTTATCATCCTGAGGTTGTGAAGGAATCCCTTTCAATTGGTCTAGATAAAAGTCCGCCATGCATTGAACCCGTTGGCAAACTTCTTGAGTATCTGTTCGTGAAGAAGATTCTTTCAGCCAGAGACATAGGGACTGGGTGCATGTTATTTGCCTCTGTGCTGGATGATATCGGCATAGACTTACCTAAAGCACCAAATAATTTTGGTGAGATAATAGGGAAACTAGTTTTGGCTGGGGCTTTGGATTTTAAGGTGGTGAGAGACGTCCTGAAGAAGGTGGAGGATGACCGGTTCCAGAAAGCTATATTATCCGCAGCATTGCAGGTAATTAGCTCTGCATCTGGGCAAGCTGTGTTGGATTCACAAGCATCTGATATTGAGGCCTGTCAGAGTCTGTTCAACTGA 2367 0.466 MQQSDPTVLSLRPGGGKGSRLLGPRFDSSSSSSASPAFGSFSADLPLLRPHGGAPSPFSIKAGDSRFEGRERVRYTREQLLQLSEGVETLDDVLKIKQEFEAELFGEDQSWARPESNPSHQFQNRYSEPDNRDWRGRSGQQPFGNADERSWDNLKENREFGNNRQEQLNSQFARAQISSNQGGGPTPTLVKAEVPWSARRGTLSEKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKGVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSDEPGGKEITFKRVLLNICQEAFEGADNLREEVRQMTAPEQEMERRDKDRLVKIRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPQDSKVCPAEENVEAICQFFNTIGKQLDESPKSRRINDMYFSRLKELSTNPQLVPRLRFMVRDVLELRSNSWVPRREEVKAKTITEIHSEAEKNLGLRPGATASMRNSRVVSGVQGNASQGGFPIARPGTGGMMPGMPGTRRMPGMPGIDNDNWEVPRTRSMPRGDMSGMQGGGRGQSPLISKTPTVNSKLLPQGSGGTISGRSSALVHGGGGAPSARPSNVGLSTEPTPQMPAPVKPVSAIPSEKPQASAPKSNVEELQRKTSSLLEEYFSVRLLDEALQCVEELKAPAYHPEVVKESLSIGLDKSPPCIEPVGKLLEYLFVKKILSARDIGTGCMLFASVLDDIGIDLPKAPNNFGEIIGKLVLAGALDFKVVRDVLKKVEDDRFQKAILSAALQVISSASGQAVLDSQASDIEACQSLFN 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05087 788 Pfam MA3 domain 624 736 IPR003891 -
Viun3g05087 788 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 58 776 IPR045208 GO:0003743
Viun3g05087 788 FunFam Eukaryotic translation initiation factor isoform 4G-2 201 437 - -
Viun3g05087 788 FunFam Eukaryotic translation initiation factor isoform 4G-2 617 778 - -
Viun3g05087 788 MobiDBLite consensus disorder prediction 24 39 - -
Viun3g05087 788 SMART if4_15 210 436 IPR003890 GO:0003723|GO:0005515
Viun3g05087 788 Pfam MIF4G domain 210 435 IPR003890 GO:0003723|GO:0005515
Viun3g05087 788 ProSiteProfiles MI domain profile. 623 745 IPR003891 -
Viun3g05087 788 SMART ma3_7 624 736 IPR003891 -
Viun3g05087 788 MobiDBLite consensus disorder prediction 1 65 - -
Viun3g05087 788 SUPERFAMILY ARM repeat 617 775 IPR016024 -
Viun3g05087 788 MobiDBLite consensus disorder prediction 540 568 - -
Viun3g05087 788 MobiDBLite consensus disorder prediction 523 622 - -
Viun3g05087 788 Gene3D - 616 783 - -
Viun3g05087 788 Gene3D - 201 437 - -
Viun3g05087 788 SUPERFAMILY ARM repeat 203 439 IPR016024 -
Viun3g05087 788 MobiDBLite consensus disorder prediction 107 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05087 Viun-Chr3 57540834 57546879 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05087 1 786 Eukaryotic Initiation Factors Gene Family AT5G57870 66.541 0.0 995
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05087 K03260 - gmx:100781275 1353.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05087 3 57540834 57546879 Viun3g05087 3 57540834 57546879 ECH