Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05079 ATGATGGCATTATTCCAAAGGAAGGTTCATACCTTCTTCCTGTGCTTATTATCAATCTCTGCATTCTCTTCCCTTGTTGCTGTTGCTGTGCCAAAAGAGCAAGAACAAGATCGGATCTCAGCACTTCCAGGGCAGCCACGTGTGGCATTCTCTCAGTTCTCTGGTTATGTCAGTGTGAACGAGCAACATGGTCGAGCACTCTTCTACTGGTTCACTGAATCTCCCTCTTCTCCTCAGAATAAGCCTCTTGTTCTCTGGCTCAATGGAGGGCCTGGATGCTCATCTGTAGCATACGGTGCATCAGAGGAAATTGGGCCATTCCGTATAAACAAAACTGGATCTTCTCTGTATCTCAACCCAGATGCATGGAACAGAGAAGCAAATATTCTTTTTCTTGAATCACCTGCTGGTGTTGGCTTCTCATACACAAATACCAGCTCCGATCTCAAAACTTCAGGGGACAAAAGAACAGCTCAAGATGCACTGATTTTTCTAATCAGATGGTTGTCAAGGTTTCCACAGTATAAATATAGAGAGTTTTACATTGCTGGGGAGAGCTATGCAGGGCACTACGTCCCCCAGTTGGCTAAGAAAATCCATGACTATAACAAAAACAATCCTCAAATTATTAATCTCAAAGGGTTCATTGTTGGAAATGCTGTGACTGATAGCTACAATGATGGCATTGGAACCATCACATATTGGTGGAGCCATTCTATGATATCTGATCACTCCTACAAATCCATTCTCAAGTACTGCAATTTCACTTCAGAAGAAACATCTAAAAAATGTGATGATGCTTATAGTTATGCAGTTAACTATGAATTTGGAAAAATAGATCAGTACAGCATCTACACCCCAACGTGCCCAATATCACTGAACAATACTGTCAAACACATACGGTTCAAGAATCTTCATATGATTTCAGGATACGATCCATGTACTGAAAATTATGCAGAGAAATACTATAACCTTCCTGAAGTGCAGAAAGCAATGCATGCAAATCTTACCAGCATTCCTTACAAATGGACTGCTTGCAGTGAAGTGCTCCTAAAGAATTGGAAGGATTCTGAAATTTCTGTGCTGCCTATATACAAAGAGTTAATTGCTGCAGGATTGAAAATATGGGTATTCAGCGGGGACACAGATTCTGTTGTTCCAGTAACTGCCACAAGGTTCTCTCTGAACCACCTTAACCTCAGCATCAAAACTCGTTGGTATCCATGGTACTCTGGTGGACAGGTTGGAGGATGGACAGAGGTGTATAATGGTCTAACTTTTGCAACAGTAAGAGGAGCAGGCCATGAAGTTCCTTTGTTTCAGCCAAAACGAGCTTACACCCTTTTTAAGTCCTTTTTGGCAGGAAAACAACTTCCAAAACATTGA 1386 0.4156 MMALFQRKVHTFFLCLLSISAFSSLVAVAVPKEQEQDRISALPGQPRVAFSQFSGYVSVNEQHGRALFYWFTESPSSPQNKPLVLWLNGGPGCSSVAYGASEEIGPFRINKTGSSLYLNPDAWNREANILFLESPAGVGFSYTNTSSDLKTSGDKRTAQDALIFLIRWLSRFPQYKYREFYIAGESYAGHYVPQLAKKIHDYNKNNPQIINLKGFIVGNAVTDSYNDGIGTITYWWSHSMISDHSYKSILKYCNFTSEETSKKCDDAYSYAVNYEFGKIDQYSIYTPTCPISLNNTVKHIRFKNLHMISGYDPCTENYAEKYYNLPEVQKAMHANLTSIPYKWTACSEVLLKNWKDSEISVLPIYKELIAAGLKIWVFSGDTDSVVPVTATRFSLNHLNLSIKTRWYPWYSGGQVGGWTEVYNGLTFATVRGAGHEVPLFQPKRAYTLFKSFLAGKQLPKH 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05079 461 Gene3D alpha/beta hydrolase 33 291 IPR029058 -
Viun3g05079 461 FunFam Carboxypeptidase 310 458 - -
Viun3g05079 461 FunFam Carboxypeptidase 361 455 - -
Viun3g05079 461 ProSitePatterns Serine carboxypeptidases, histidine active site. 425 442 IPR033124 GO:0004185
Viun3g05079 461 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 39 442 IPR001563 GO:0004185|GO:0006508
Viun3g05079 461 Gene3D - 361 455 - -
Viun3g05079 461 SUPERFAMILY alpha/beta-Hydrolases 29 459 IPR029058 -
Viun3g05079 461 ProSitePatterns Serine carboxypeptidases, serine active site. 182 189 IPR018202 GO:0004185
Viun3g05079 461 FunFam Carboxypeptidase 33 291 - -
Viun3g05079 461 Gene3D - 314 351 - -
Viun3g05079 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 132 142 IPR001563 GO:0004185|GO:0006508
Viun3g05079 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 425 438 IPR001563 GO:0004185|GO:0006508
Viun3g05079 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 119 131 IPR001563 GO:0004185|GO:0006508
Viun3g05079 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 193 IPR001563 GO:0004185|GO:0006508
Viun3g05079 461 Pfam Serine carboxypeptidase 44 454 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05079 Viun-Chr3 57494222 57500095 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05079 319 458 Calmodulin-binding Proteins AT2G22960 30.496 3.47e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05079 K16297 - gmx:100785391 872.078