Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05069 ATGGCTGAGCGCCGCAGCCCCCAAGCACTCCCAGACCCGCACCCCAAACCAAACGATTCCGACCAAAAACCGCACCACGCCAACCAGACACAACGACTCACCGAATCGCCCTCCGCCGCCGAGTCGCATGGCGGCGAGTTACGAAGTTCCGATGAGCGTCGAACGGAGTCCAATTTAGAAACCCTAGGCGGTGCCGTTGCCTCTTCGGTGCAAACCCTTGCTGTGCAGCACCATCGCAGTGACGATTTGCACGGGGGCTCTGCTGCGTTGAATTCCAGTGGCAAAGCCGAAAGTAAGGAGACAGATGCACCTCCTGAAAAAGAAATTATTCAAGGAGGAGAAGCCCAGCCACTTCCAACTCAGACAAATCGGCTTCAGCTGTCTGTGTGTTCAACTCCATTGTCTGAACTGCCACCAACTTCTGTTACACAATCTTTATCATCTGTTTCTAGTCCAACTGTACCCAAACAAAAATTATCTACTCCAAAGGTCAATAATGCACGTTTGCCAGAGGTAGATAAGAAAAGTTCTTCTGGTGGCAAAACCTTATCTGCTGTTTCTGTTGCAAGGTCATCAGCATCTGATGGATATAACTGGCGGAAGTATGGTCAGAAGCAAGTAAAGAGTCCTACAGGTTCTCGAAGCTATTACAGGTGTACTCATTCAGACTGTTGTGCTAAGAAGATTGAATGTTGTGACCATTCAGGTCATGTGATAGAGATTGTTTATAAAAGTGAGCACAGTCATGATCCTCCACTGAAGACTAATTCTCTTAGGGAAAATAAGATTCCGTCTGCCAGCGAACCTATTGTAGAAAAAAGTGTTCCAGATCAGCCTGTCAGACTTCTGAAGGATCCTGATCCATCCATTTCGTCAAAAGAATCTCTGCAAGAAGCACCCTGCAGCACTGATAAGAAACGGCCAAATGCTTCTAGTATCAGTAATGGTAAAGTTATTTTGAAAGAGGAACATGTAAATGAGCCAGAGCCGAAAAAAAGAATGAAGAAAGACTTAACAGACATGGATTCTCCTGTAAAACCTGGAAAGAAGCCCAAGTTTGTCATACATGCAGCAGGGGATGTGGGGATATCTGGTGATGGTTATCGATGGCGGAAGTATGGGCAGAAAATGGTGAAGGGAAATCCGCATCCCAGGAACTACTACAGATGCACTTCTGCTGGATGTCCTGTGAGAAAGCACATTGAATCTGCCGTAGATAACTCAGATGCGGTGATTATAACATACAAGGGAGTACACGACCATGACATGCCTGTGCCCAAGAAACGACACGGGCCACCAAGTGCTCCTCTTGTGGCAGCTGCAGCACCCGCGTCCATGAACAGTTTGCAGGTGAAGAAACCCGATTCCCCACAGAAGAAGAAAGTTTCTACTCAATGGTCGGTGGACACGGAAGGAGAACTAACTGGGGAAGCCCTGGAGCTTGGGGGTGAGAAAGCAATGGAATCAGCTCGAACGCTTCTGAGCATAGGTTTTGAAATTAAGCCTTGCTGA 1512 0.4749 MAERRSPQALPDPHPKPNDSDQKPHHANQTQRLTESPSAAESHGGELRSSDERRTESNLETLGGAVASSVQTLAVQHHRSDDLHGGSAALNSSGKAESKETDAPPEKEIIQGGEAQPLPTQTNRLQLSVCSTPLSELPPTSVTQSLSSVSSPTVPKQKLSTPKVNNARLPEVDKKSSSGGKTLSAVSVARSSASDGYNWRKYGQKQVKSPTGSRSYYRCTHSDCCAKKIECCDHSGHVIEIVYKSEHSHDPPLKTNSLRENKIPSASEPIVEKSVPDQPVRLLKDPDPSISSKESLQEAPCSTDKKRPNASSISNGKVILKEEHVNEPEPKKRMKKDLTDMDSPVKPGKKPKFVIHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIESAVDNSDAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMNSLQVKKPDSPQKKKVSTQWSVDTEGELTGEALELGGEKAMESARTLLSIGFEIKPC 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05069 503 ProSiteProfiles WRKY domain profile. 188 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g05069 503 MobiDBLite consensus disorder prediction 290 316 - -
Viun3g05069 503 MobiDBLite consensus disorder prediction 115 164 - -
Viun3g05069 503 MobiDBLite consensus disorder prediction 177 195 - -
Viun3g05069 503 MobiDBLite consensus disorder prediction 320 349 - -
Viun3g05069 503 MobiDBLite consensus disorder prediction 448 469 - -
Viun3g05069 503 Pfam WRKY DNA -binding domain 195 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g05069 503 Pfam WRKY DNA -binding domain 366 421 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g05069 503 SUPERFAMILY WRKY DNA-binding domain 360 424 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun3g05069 503 Gene3D WRKY domain 350 425 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun3g05069 503 Gene3D WRKY domain 179 253 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun3g05069 503 FunFam WRKY transcription factor 353 425 - -
Viun3g05069 503 MobiDBLite consensus disorder prediction 61 76 - -
Viun3g05069 503 MobiDBLite consensus disorder prediction 247 351 - -
Viun3g05069 503 SMART WRKY_cls 364 423 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g05069 503 SMART WRKY_cls 193 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g05069 503 ProSiteProfiles WRKY domain profile. 359 424 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g05069 503 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 143 451 IPR044810 GO:0003700
Viun3g05069 503 SUPERFAMILY WRKY DNA-binding domain 191 252 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun3g05069 503 MobiDBLite consensus disorder prediction 1 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05069 Viun-Chr3 57411648 57417578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05069 128 503 WRKY Transcription Factor Family AT4G30935 56.545 3.40e-133 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun3g05069 WRKY 2.3e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05069 - - gmx:100127377 792.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05069 3 57411648 57417578 Viun3g05069 3 57411648 57417578 ECH