Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05067 ATGGGGTTGGGAGTGTTTGGTTCTGTTCTGGTTTTGGTACTTTTGTTCAAGCATTTGGCATCTCAGCAACCAAATACTGATGACTTCTTTGTATCTGCTTTCTTGAAGCATATGAGTTTAACATCCTCACAAGCCTACAATTTCTCTGCTTCTGTGTGTTCTTGGCAAGGGGTTTCTTGTGATGCCAATAGAGAACATGTTGTTAGCTTAGTCTTTTCTGGTATGAACCTCTCTGGCACTGTACCTGATAACACCATAGGCAAGCTTGGCAAACTTCAAACTTTGGATCTTAGCCACAACAAAATCACTGGCTTGCCTTCAGATTTTTGGAGCCTAAGTTCCCTCAAGAACCTTAACCTCTCATGGAATCATATTTCTGGTTCACTGACTAGCAACATTGGCAACTTTGGTTTGCTAGAAAGCATTGACTTGTCCAGCAACAATTTCTCCGAGGAAATTCCTGAAGCTGTTTGCTCACTGCTGAGTCTAAGGATTCTAAAACTCAACCACAACAGGTTTGCACACAACATACCTTCTGGGATTCTCAAGTGCCAGACTCTAGTTTCAATTGATCTTTCATCAAATCAGCTCAATGGAACACTTCCAGAAGGTTTTGGTGCTTCTTTTCCCAAGCTTAGGATGTTGAACCTTGCTGGGAATAATTTTAATGGTCGTGTTTCAGATATTTCTGGATTAAAGTCCATTGCTAATCTCAACATATCAGGGAATTCGTTTCAGGGTTCCATTGTGGACATGTTTCAGGGAAATTTGGAGGTTTTGGACATTAGCAGAAACCAATTTCAAGGCCACATTCCACAGGTACTATACAACTTTAGTGGTTACAACTGGTCTCATTTAGTTTACCTGGATTTGTCAGAGAATAAGCTTAGTGGGGAGTTTTTTCAAAATTTGAACGAGTCATTGAATTTGAAACACATTAATCTTGCACACAATAGATTCACCATACAGAAATTACCCCAAATTGAAATGCTCCTGAATTTGGAATATCTGAACTTATCCAAAACCAGCCTTGTCGGTGAAATTCCTGGTAAAATCTCACAATTAATCAAATTGAGTGCCCTTGATCTTTCATTGAATCATCTGAGTGGGAAAATTCCCTCACTGAGGAATGAACACCTCCGAGTCTTAGACCTCTCAAACAACAATTTGACTGGAGCAGTCCCTCAATCTGTCCTTGAAAAACTCCATTTTATGGAGAAATACAACTTCTCTTATAATAACCTAACCCTTTGTGCTTCTGAAATCAAACCTGAGATCCTGCAAAAAGCATTCTTTGGATCATTGAACAGTTGTCCACTTGCTGCAAATCCGCGACTCTTCAAAAGAAGAGACAGTGGACACACGGGAATGAAGCTGGCCCTGGCACTGACCTTCTCAATGATCTTTGTGCTGGCTGGGCTTTTGTTTCTAGCATTTGGTTGCAGAAGGAAAACAAAAATGTGGGAATTCAAGCAATCATCATACAAAGAGGAACAAAACATTTCAGGTCCCTTTTCATTCCAGACTGATTCAACAACATGGGTGGCTGATGTCAAGCAAGCAACATCAGTCCCAGTAGTAATCTTTGAGAAGCCATTGTTGAACATCACATTTGCAGACCTCTTGGCTGCAACTTCCAACTTTGACAGAGGCACCCTTTTGGCTGAGGGAAAATTTGGGCCAGTCTATAGAGGTTTTCTGCCTGGTGGTATTCATGTAGCAGTTAAAGTTTTGGTTGTTGGTTCTACATTAACAGATGAGGAGGCTGCAAGAGAGCTAGAGTTTCTTGGTAGAATCAAGCACCCCAATCTTGTTCCTTTAACTGGATATTGTGTGGCTGGGGATCAAAGAATTGCTATATACGATTACATGGAGAATGGTAACTTGCAGAACCTGCTTTACGACCTGCCACTTGGGGTACAAAGCACAGATGATTGGAGCACAGACACATGGGAAGAAACAGACAACAATGGAATTCAAAACGCTGGCTCTGAAGGGTTACTCACATCTTGGAGATTTCGCCACAAGATAGCTCTTGGCACGGCTCGAGCATTGGCATTTCTGCATCATGGTTGCTCCCCTCCAATAATTCACAGAGCAGTTAAGGCTAGCAGTGTTTATTTGGACTATGATTTGGAGCCGAGGTTGTCGGATTTTGGACTTGCCAAGATTTTTGGAAGTGGCTTGGATGATGAAATTGCGCGTGGCTCACCTGGTTATGTTCCACCAGAGTTTTCTCAACCGGAATATGACACCCCAACTCCAAAATCTGATGTGTACTGTTTTGGGGTGGTGTTGTTTGAGCTAGTAACTGGAAAAAAACCAGTTGGAGATGACTACCCTGATGATAAAGATGCAACTTTGGTGAGCTGGGTGAGAGGACTTGTGAGAAAGAACCAATCTTCAAATGCCATTGATCCAAAAATTCGTGACACAGGACCGGATGAACAAATGGAAGAGGCTCTTAAGATTGCTTATCTTTGCACTGCGGATCATCCCTTCAAACGACCAAGCATGCAACAGATAGTTGGACTTCTGAAGGATATTGAACCTTCTGCTGATTAA 2565 0.4187 MGLGVFGSVLVLVLLFKHLASQQPNTDDFFVSAFLKHMSLTSSQAYNFSASVCSWQGVSCDANREHVVSLVFSGMNLSGTVPDNTIGKLGKLQTLDLSHNKITGLPSDFWSLSSLKNLNLSWNHISGSLTSNIGNFGLLESIDLSSNNFSEEIPEAVCSLLSLRILKLNHNRFAHNIPSGILKCQTLVSIDLSSNQLNGTLPEGFGASFPKLRMLNLAGNNFNGRVSDISGLKSIANLNISGNSFQGSIVDMFQGNLEVLDISRNQFQGHIPQVLYNFSGYNWSHLVYLDLSENKLSGEFFQNLNESLNLKHINLAHNRFTIQKLPQIEMLLNLEYLNLSKTSLVGEIPGKISQLIKLSALDLSLNHLSGKIPSLRNEHLRVLDLSNNNLTGAVPQSVLEKLHFMEKYNFSYNNLTLCASEIKPEILQKAFFGSLNSCPLAANPRLFKRRDSGHTGMKLALALTFSMIFVLAGLLFLAFGCRRKTKMWEFKQSSYKEEQNISGPFSFQTDSTTWVADVKQATSVPVVIFEKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDEEAARELEFLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVQSTDDWSTDTWEETDNNGIQNAGSEGLLTSWRFRHKIALGTARALAFLHHGCSPPIIHRAVKASSVYLDYDLEPRLSDFGLAKIFGSGLDDEIARGSPGYVPPEFSQPEYDTPTPKSDVYCFGVVLFELVTGKKPVGDDYPDDKDATLVSWVRGLVRKNQSSNAIDPKIRDTGPDEQMEEALKIAYLCTADHPFKRPSMQQIVGLLKDIEPSAD 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05067 854 Gene3D Ribonuclease Inhibitor 179 278 IPR032675 -
Viun3g05067 854 Gene3D Ribonuclease Inhibitor 279 376 IPR032675 -
Viun3g05067 854 Gene3D Phosphorylase Kinase; domain 1 508 623 - -
Viun3g05067 854 PRINTS Leucine-rich repeat signature 355 368 - -
Viun3g05067 854 PRINTS Leucine-rich repeat signature 92 105 - -
Viun3g05067 854 Pfam Leucine rich repeat 80 125 IPR001611 GO:0005515
Viun3g05067 854 Pfam Leucine rich repeat 162 222 IPR001611 GO:0005515
Viun3g05067 854 ProSiteProfiles Leucine-rich repeat profile. 379 400 IPR001611 GO:0005515
Viun3g05067 854 FunFam Putative LRR receptor-like serine/threonine-protein kinase 509 623 - -
Viun3g05067 854 ProSiteProfiles Protein kinase domain profile. 548 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05067 854 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 228 849 - -
Viun3g05067 854 Pfam Leucine Rich repeat 377 392 IPR001611 GO:0005515
Viun3g05067 854 SUPERFAMILY Protein kinase-like (PK-like) 534 846 IPR011009 -
Viun3g05067 854 SUPERFAMILY L domain-like 46 418 - -
Viun3g05067 854 Gene3D Transferase(Phosphotransferase) domain 1 624 854 - -
Viun3g05067 854 Pfam Protein tyrosine and serine/threonine kinase 552 844 IPR001245 GO:0004672|GO:0006468
Viun3g05067 854 FunFam Nuclear pore complex protein NUP107 29 179 - -
Viun3g05067 854 Gene3D Ribonuclease Inhibitor 30 178 IPR032675 -
Viun3g05067 854 FunFam Calmodulin-binding receptor kinase CaMRLK 255 375 - -
Viun3g05067 854 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Viun3g05067 854 Gene3D Ribonuclease Inhibitor 377 450 IPR032675 -
Viun3g05067 854 SMART LRR_typ_2 160 184 IPR003591 -
Viun3g05067 854 SMART LRR_typ_2 378 401 IPR003591 -
Viun3g05067 854 SMART LRR_typ_2 89 111 IPR003591 -
Viun3g05067 854 SMART LRR_typ_2 112 136 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05067 Viun-Chr3 57385835 57389314 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05067 70 849 Receptor kinase-like Gene Family AT5G07280 32.207 1.46e-112 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Viun3g05067 PK_Tyr_Ser-Thr 2.7e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05067 - - gmx:100797738 1517.67