Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05063 ATGCTCCGCAAATTGTTCTTCCGCAAGCCTCCAGATGGCCTCCTCGAGATCTGCGAGAGAGTTCACGTTTTTGATTGCTGCTTCACCACGGATACATGGAAAGAAGGGAATTACAATTACAAAGATTACATGGACGGGATAGTTGGTCGACTTAAGGAGAACTTGCCTGATGCTTCGATTCTTATTTTCAATTTTCGCGAGGAAGGTACCAAGACTCAGATGGGAAGTATCATGTCTGAGCATGACATTACTATCATGGACTATCCTCTGCACTACCAAGGTGTTCCCGTGCTAAAAATGGAGCTCATCCACCACTTTCTGAGGTCTGGTGAAAGCTGGCTCTCGCTTGGGCAAGACAATATGTTGCTGATGCATTGTGAACCTGGTGGTTGGCCTGTTTTGGCTTTCATGTTGGCTGCATTGTTGATTTATAGAAAGGCTTATACTGGGGAGCAGAGGACTCTCGATATGGTTTACAGGCAGGCTCCTCACGAGCTTTTGCATTTGTTGTCACCGTTGAATCCTATCCCTTCCCAACTGAGGTATCTGCTGTATATTTCCAGGAGGAATGTGGCCTTAGATTGGCCTCCTCTGGACAGGGCACTTATGTTGGACTGCATCATTCTCAGACTCTTCCCAAACTTTGACAGTGAAGGTGGTTGTCATCCTGTGTTTAGAATTTATGGACAGGATCCCTTTAATGCTGATAAATTTCCCAAAATGTTGTACTCAACGCCCAAGAGAAGCAAAAATGTTCGGGCCTTTAAGCAGGGAGAGTGTGAACTTATTAAAATTGATATCAACTGCCATATTCAAGGTGACGTTGTCATTGAGACTATTAACTTTAATGGTGACATGGAGAGTGAAAGGATGATGTTTCGAATCATGTTTAACACAGCCTTTGTTAGATCTAATATTTTGATGCTTAACCGGGATGAAATTGACATTTTATGGGATGCTAAAGATCACTTTCCAAACGATTTTAGAGTTGAGATCCTTTTCTCAGAGATGGATGCTGCAATTGTTGTTGCCGATAGGACCTCATGCTTTGAGGAGAAGGATGGACTGCCAATGGAAGCATTTGCCAAGGTTCAAGAGATCTTTAGCCATGTAGACTGGATGAACCCCAAGGCAGATGTTGCCCTAAATGCTCTCCAACTTATAAGTGATTCGACTATGAATGATAGCTTAGATGAAAAAGGTCCTAGAACGCCTCAAGGGAATTTGAATGAAGAGGTACGGTCTTCATTCTCAACCAAGACATCCCGTATGAGTAGAAAAGAGGAGAAGACCAACAAGTTCGAGGGTATTCCGCAGCAACATAGTATACCTAACAATATTTGTCAAGATTCAGTCAGAACTTCTAAAAGGACCTCGGAATCCAATAAATGTCCAACAAGACCTACAAATCTTGACATAAAACTGCAAGCACCTCATCCTGCCATATTTTCTACCGATACTTCGTTTTCCCCTCGAACACCTCCTTTGAGGCCTCAATCCACTAGTGATAAAGAAGCTCATGATTCTCCTTGCCAAACAAAATCTCCCCCTTCTTATTATGTTGTGCCTTTGCAATCAAGACACCAATCACAAGACAGAAGTCATTCATCTATTTCTGTCCCTACACCTGACACCCAATTGTCATCTACTTTTCATAGCAAGTTACTGGCTGACATCATTTCCTGTCCTTCAGCTCCAACACTTACTTCAACCCAATCATCTCCTTCACTTTCTTCCAAAAATGTGGATGAGATTCCTCCTATTAAAACAAGAATAGAGTCTTCCCCTCCACGACCTCCAACTCCGCCTCCTCCTCCCACTCCTCCAGTAAATGATCATAGACTAGTTCGAGCTAGACCACCTCCACCACCTCCTCCACCACCTCCTCTTCCTCCAAAGAAAGAACTGCATGTTAAAGCTGCACCCCATCCTTCTCCTTTATCACATATGAATGTGGCGCCACAGGTTAGAGATGGACCCTCTCCTCCCCTTTCTCTAAAAGAGGAGCAACCTACTAGGTTTAAACCTCCTTGTCTCTCTGGGGAAGTTGCAGGTTTTACTATAGTACCACCTCCACCTCCACCTCCACTTTCAAGTGAAGTACTTTACTCAAATCACACTAATTCATCATTGCAAAAATCTCTAGCTCCTCCCTCTCCTCCTGAGGCACCTGCGCCTCCCCCTCCTCCTCCCCCTCCTCCTGGTGCACCTGCTCCTCCCCCTCCTCCTGGTGCGCCTGCTCCTCCCCCTCCTCCTGGTGCGCCTGCTCCTCCCCCTCCTCCTGGTGCACCTGCTCCTCCACCTCCACCTGGAGCACCTGCTGCTCCACCTCCTCCAATGCCCTTTGGTAAAGGAGGTCTAAAATCAGGCAGTTCATTTTCAGGATCTCTTTCTGTGAACGCTCGATCTAGTTCAGCAACTAACTTAAAGGGAATTTTATCGCGAACAATTACCTCAAAGAATAACACTAAAAGGTTGAAGCCTTTGCATTGGTTGAAACTATCTAGAGCAGTGCAAGGAAGTTTGTGGGCAGAGTCACCGAAGTCTGGTGAAGCTTCCAAGGCCCCAGAAATTGATATGTCAGAGCTTGAGAATCTCTTCTCAGCAGCAGTCCCAACTTCAGGTATTGCCAAAAAGTCAAATGTCCAAAGCTCAGCTGGGCCTAAATCTGAAAAAGTGCAACTGATTGAGCATAGGCGAGCATATAACTGTGAAATCATGCTTTCCCAAGTGAAAGTGCCTTTGCATGATTTAATGACCTCAGTGCTAGCACTGGAAGAGTCAGCACTGGACTCTGATCAGGTTGAGAACCTCATAAAGTTCTGTCCAACAAAAGAGGAAATGGAATTGCTCAAGGGTTATAACGGGGATAGGGAGAAGTTAGGAAGATGTGAACAGTTCTTAATGGAATTGATGAAAGTACCACGAGTGGAATCCAAGCTCAGAGTTTTTTCATTCAAGATTCAATTTCGCTCTCAGGTTTCTGACCTAAGAAAGAGCCTGCTTGTTGTGAATGCTGCTTCAGAAGAGATCAGGAATTCGGTCAAACTAAAGAGAATTATGCATACAATACTTTCTTTAGGAAATGCTTTGAACCAAGGAACAGCCAGGGGTTCTGCTATTGGATTCAGATTGGACAGCCTTCTTAAACTAACCGAGACACGGGCACGGGACAAAAAGATGACTCTTATGCATTATCTTTGTAAGGTGCTTGTTGACAAACTACCGGATGTCTTAGACTTCTCCAACGATCTTTCTGACCTAGAGCCAGCAGCAAAGATCCAATTGAAGTTTTTGGCTGAGGAGATGCAAGCTATAAACAAAGGATTAGAAAAAGTAGTACAGGAACTCTCAACTGCTGAATGTGATGGGCCTATATCAGAAACTTTTCGCAAGAAACTGAAAGAGTTCCTCGGTTCTGCTGAAGCTGAAGTCCGCTCAATTGCTTCACTATATTCTACCGTGGGTAGGAACGTGGATGCATTGATTCTCTATTTTGGTGAAGATCCATCTCGTTGCCCATTTGAGCAAGGTGTGTGA 3540 0.4452 MLRKLFFRKPPDGLLEICERVHVFDCCFTTDTWKEGNYNYKDYMDGIVGRLKENLPDASILIFNFREEGTKTQMGSIMSEHDITIMDYPLHYQGVPVLKMELIHHFLRSGESWLSLGQDNMLLMHCEPGGWPVLAFMLAALLIYRKAYTGEQRTLDMVYRQAPHELLHLLSPLNPIPSQLRYLLYISRRNVALDWPPLDRALMLDCIILRLFPNFDSEGGCHPVFRIYGQDPFNADKFPKMLYSTPKRSKNVRAFKQGECELIKIDINCHIQGDVVIETINFNGDMESERMMFRIMFNTAFVRSNILMLNRDEIDILWDAKDHFPNDFRVEILFSEMDAAIVVADRTSCFEEKDGLPMEAFAKVQEIFSHVDWMNPKADVALNALQLISDSTMNDSLDEKGPRTPQGNLNEEVRSSFSTKTSRMSRKEEKTNKFEGIPQQHSIPNNICQDSVRTSKRTSESNKCPTRPTNLDIKLQAPHPAIFSTDTSFSPRTPPLRPQSTSDKEAHDSPCQTKSPPSYYVVPLQSRHQSQDRSHSSISVPTPDTQLSSTFHSKLLADIISCPSAPTLTSTQSSPSLSSKNVDEIPPIKTRIESSPPRPPTPPPPPTPPVNDHRLVRARPPPPPPPPPPLPPKKELHVKAAPHPSPLSHMNVAPQVRDGPSPPLSLKEEQPTRFKPPCLSGEVAGFTIVPPPPPPPLSSEVLYSNHTNSSLQKSLAPPSPPEAPAPPPPPPPPPGAPAPPPPPGAPAPPPPPGAPAPPPPPGAPAPPPPPGAPAAPPPPMPFGKGGLKSGSSFSGSLSVNARSSSATNLKGILSRTITSKNNTKRLKPLHWLKLSRAVQGSLWAESPKSGEASKAPEIDMSELENLFSAAVPTSGIAKKSNVQSSAGPKSEKVQLIEHRRAYNCEIMLSQVKVPLHDLMTSVLALEESALDSDQVENLIKFCPTKEEMELLKGYNGDREKLGRCEQFLMELMKVPRVESKLRVFSFKIQFRSQVSDLRKSLLVVNAASEEIRNSVKLKRIMHTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARDKKMTLMHYLCKVLVDKLPDVLDFSNDLSDLEPAAKIQLKFLAEEMQAINKGLEKVVQELSTAECDGPISETFRKKLKEFLGSAEAEVRSIASLYSTVGRNVDALILYFGEDPSRCPFEQGV 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05063 1179 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Viun3g05063 1179 Gene3D Protein tyrosine phosphatase superfamily 12 191 IPR029021 -
Viun3g05063 1179 Gene3D - 196 340 - -
Viun3g05063 1179 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 61 187 IPR029021 -
Viun3g05063 1179 MobiDBLite consensus disorder prediction 567 805 - -
Viun3g05063 1179 MobiDBLite consensus disorder prediction 511 547 - -
Viun3g05063 1179 ProSiteProfiles C2 tensin-type domain profile. 199 337 IPR014020 -
Viun3g05063 1179 MobiDBLite consensus disorder prediction 567 583 - -
Viun3g05063 1179 MobiDBLite consensus disorder prediction 393 420 - -
Viun3g05063 1179 MobiDBLite consensus disorder prediction 436 469 - -
Viun3g05063 1179 MobiDBLite consensus disorder prediction 481 500 - -
Viun3g05063 1179 Gene3D Formin, FH2 domain 815 1178 IPR042201 -
Viun3g05063 1179 MobiDBLite consensus disorder prediction 717 783 - -
Viun3g05063 1179 MobiDBLite consensus disorder prediction 789 805 - -
Viun3g05063 1179 Coils Coil 1096 1120 - -
Viun3g05063 1179 SMART it6_source 816 1177 IPR015425 -
Viun3g05063 1179 SUPERFAMILY Formin homology 2 domain (FH2 domain) 891 1176 - -
Viun3g05063 1179 MobiDBLite consensus disorder prediction 393 547 - -
Viun3g05063 1179 MobiDBLite consensus disorder prediction 421 435 - -
Viun3g05063 1179 ProSiteProfiles Formin homology-2 (FH2) domain profile. 816 1179 IPR015425 -
Viun3g05063 1179 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 202 337 IPR035892 -
Viun3g05063 1179 SMART PTEN_C2_2 197 336 IPR014020 -
Viun3g05063 1179 PANTHER FORMIN-J 2 1177 - -
Viun3g05063 1179 Pfam Formin Homology 2 Domain 820 1177 IPR015425 -
Viun3g05063 1179 MobiDBLite consensus disorder prediction 592 635 - -
Viun3g05063 1179 MobiDBLite consensus disorder prediction 700 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05063 Viun-Chr3 57332815 57344222 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05063 763 1179 Protein tyrosine phosphatase (PTP) family AT5G58160 68.345 1.97e-180 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05063 - - var:108329436 1272.69