Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05055 ATGCAACCTTGTAGTAGAGAAATGCAAGGCGCTAACAATAACTCTCTCTTTAACAACAACAATGGTGGTAACAATCAGCAACAGATCCACTTTGATGCAACTTCCAACGACGATTTCCTCAAGCAAATGCTCTCCAACCTCCCTTCGTCTTCTCCATGGACACTGGACCCCAAACACAACCCCTTATGGGACCCTAATTCCGACGAGACCACGCCGGAAAACAACGTCGTTTTCCCCTACGACCTCGAACAAGCCAACTTGGCCTCCAAGTTTCGCAACCACCAGATCACCGATGACAAAGCCTCCGCTCTCATGCTCCAACACCACCATCAACTCCTCCTCTCCTCCGCCGCTGCCAATTCCCCCCTCCTCCAAATGCCCGTCTCCTCGCTAAACGACGTCGTTCACGCCTCCTCCTTCAAATCTCCCGCTCCGAACGCTGACCCTTCTTCTGTTCAACCTCTCTACAACGCCTTCTCCGCCTCTCTCCAAGGCGCCGCCCAACCCTCCAACCAAACTCACCATTTTCAACTTCCTCAACAGGGGCAGAGTTTTGGAGCTTCGGCTCCGGCCAGTGGTGGTGGTGGCGGTGCTTCCGGTCAGCCGAAGCAGAGGGTTAGAGCGAGGAGAGGTCAAGCCACGGACCCACACAGCATCGCCGAAAGGTTACGGAGGGAGAGAATCGCAGAGCGAATGAAGGCCCTGCAGGAACTGGTTCCCAATGCCAACAAGACTGATAAGGCCTCCATGTTGGATGAGATCATCGATTATGTGAAGTTCCTACAGCTCCAAGTCAAGGTTTTGAGCATGAGCAGATTGGGAGGTGCAGCGGCTGTGGCACCCCTTGTTGCTGATATATCTTCTGAGGGAGGCGCTGACTGCGTTCAACAAAAACGCAACAACACCAACGGTAACTCAAACGGCAACCATGGTTCTTCAAACGACACCCTGACGACGACGGAGCAACAGGTGGCGAAGCTGATGGAGGAAGACATGGGATCCGCCATGCAGTACCTGCAGGGGAAAGGTCTCTGCCTCATGCCCATTTCTCTCGCCACCGCCATCTCCAAAGCCACGTGTCACACCAGAAACCCTTTCGCCAACGGCGATGGCCCCTCCTCCCCCGGAATATCCGCGCTCACCCTGCACTCCTCCACTCTCAGCAACGGCCTCGTCAAAGACACCGCCTCCGTTTCCAAGTCCTGA 1206 0.5489 MQPCSREMQGANNNSLFNNNNGGNNQQQIHFDATSNDDFLKQMLSNLPSSSPWTLDPKHNPLWDPNSDETTPENNVVFPYDLEQANLASKFRNHQITDDKASALMLQHHHQLLLSSAAANSPLLQMPVSSLNDVVHASSFKSPAPNADPSSVQPLYNAFSASLQGAAQPSNQTHHFQLPQQGQSFGASAPASGGGGGASGQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADISSEGGADCVQQKRNNTNGNSNGNHGSSNDTLTTTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISKATCHTRNPFANGDGPSSPGISALTLHSSTLSNGLVKDTASVSKS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05055 401 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 55 355 - -
Viun3g05055 401 SMART finulus 218 267 IPR011598 GO:0046983
Viun3g05055 401 Pfam Helix-loop-helix DNA-binding domain 217 262 IPR011598 GO:0046983
Viun3g05055 401 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 212 261 IPR011598 GO:0046983
Viun3g05055 401 MobiDBLite consensus disorder prediction 43 73 - -
Viun3g05055 401 MobiDBLite consensus disorder prediction 208 222 - -
Viun3g05055 401 Gene3D - 207 269 IPR036638 GO:0046983
Viun3g05055 401 FunFam Transcription factor bHLH66 209 274 - -
Viun3g05055 401 MobiDBLite consensus disorder prediction 1 29 - -
Viun3g05055 401 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 210 272 IPR036638 GO:0046983
Viun3g05055 401 MobiDBLite consensus disorder prediction 182 222 - -
Viun3g05055 401 MobiDBLite consensus disorder prediction 294 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05055 Viun-Chr3 57284950 57287944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05055 191 390 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 66.990 1.35e-87 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g05055 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05055 - - gmx:100801457 463.766