Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05054 ATGGCTCCCGGGACTGGTGTCTTTGCAGAGATTTTGGATGGAGATGTGTACAAGTACTATGCCGATGGGGAGTGGAAGAAAGCTTCTTCTGGGAAAAGTGTTGCCATCATCAACCCCACTACAAGAAAGACTCAATACAAAGTTCAAGCTTGTTCACAAGAGGAGGTTAACAAGGTGATGGACTTGGCAAAATCTGCACAAAAATTATGGGCAAAGACCCCACTGTGGAAGCGGGCTGAACTTCTTCACAAGGCAGCTGCTATCCTTAAAGAGCACAAGGCTCCAATTGCAGAGTGTCTGGTGAAAGAAATAGCAAAGCCAGCCAAAGATGCTGTTACAGAGGTTGTAAGATCTGGTGATCTGATTTCTTACTGTGCTGAAGAAGGGGTAAGGATTCTGGGAGAGGGAAAGTTCTTGGTGTCTGATAGCTTTCCTGGAAATGAAAGGACCAAATATTGCCTCACATCCAAGATTCCACTTGGAGTGATTTTAGCTATTCCTCCTTTTAACTACCCTGTCAATCTTGCTGTCTCCAAAATTGCCCCTGCACTGATTGCTGGAAACTCCATTGTGCTCAAGCCTCCAACTCAGGGAGCCGTTTCTGGTCTGCACATGATTCACTGCTTTCACTTGGCTGGTTTTCCCAAGGGCCTAATCAACTGTGTCACTGGCAAAGGTTCAGAAATTGGTGACTTCCTAACAATGCATCCAGGAGTGAACTGTATAAGCTTCACTGGTGGAGATACTGGCATTGGAATTTCAAAGAAAGCAGGAATGATTCCTCTGCAAATGGAGTTGGGAGGAAAAGATGCCTGCATTGTTCTTGAGGATGCTGACCTGGATTTGGTTGCAATAAACATCATAAAGGGAGGCTTTTCATACAGTGGGCAGAGGTGCACTGCTGTTAAGGTTGTCCTGGTAATGGAGTCTGTAGCTGATGCTTTGGTTGAGAAAGTGAAGGCTAATGTGGCAAAACTAACTGTGGGAGCCCCAGAGGATGACAGTGATATCACTCCAGTTGTGTCAGAATCATCAGCCAACTACATTGAAGGCCTGGTCTTGGATGCTAAGGAGAAAGGAGCAACATTCTGCCAGGAGTACAAAAGAGAAGGCAATCTCATTTGGCCTTTGCTATTGGATCATGTGAGGCCAGACATGAGAATTGCATGGGAAGAGCCATTTGGCCCAGTTTTGCCAGTAATTAGGATCAATTCAGTTGAAGAAGGAATCCATCATTGTAATGCTAGCAACTTTGGACTTCAGGGATGTGTCTTCACAAAGGATGTAAACAAAGCAATACTGATCAGTGATGCAATGGAAACAGGAACAGTTCAGATAAATTCTGCCCCAGCTCGTGGACCAGACCATTTCCCCTTCCAGGGTATAAAGGACAGTGGCATTGGATCTCAAGGGATTACCAACAGCATAAACATGATGACCAAGGTTAAAACCACTGTGATCAACTTACCCAGCCCTTCCTACACCATGGGCTAG 1494 0.4531 MAPGTGVFAEILDGDVYKYYADGEWKKASSGKSVAIINPTTRKTQYKVQACSQEEVNKVMDLAKSAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLISYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVSGLHMIHCFHLAGFPKGLINCVTGKGSEIGDFLTMHPGVNCISFTGGDTGIGISKKAGMIPLQMELGGKDACIVLEDADLDLVAINIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVKANVAKLTVGAPEDDSDITPVVSESSANYIEGLVLDAKEKGATFCQEYKREGNLIWPLLLDHVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTKDVNKAILISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKVKTTVINLPSPSYTMG 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05054 497 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 268 458 - -
Viun3g05054 497 Pfam Aldehyde dehydrogenase family 25 484 IPR015590 GO:0016491
Viun3g05054 497 CDD ALDH_F11_NP-GAPDH 16 488 - -
Viun3g05054 497 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 268 458 IPR016163 GO:0016620
Viun3g05054 497 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 292 303 IPR016160 GO:0016491
Viun3g05054 497 PANTHER ALDEHYDE DEHYDROGENASE 1 496 - -
Viun3g05054 497 SUPERFAMILY ALDH-like 17 488 IPR016161 GO:0016491
Viun3g05054 497 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 23 288 - -
Viun3g05054 497 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 23 484 IPR016162 GO:0016491
Viun3g05054 497 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 264 271 IPR029510 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05054 Viun-Chr3 57279486 57283470 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05054 4 497 Aldehyde Dehydrogenase Gene Family AT2G24270 90.891 0.0 942
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05054 K00131 - gmx:100789100 966.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05054 3 57279486 57283470 Viun3g05054 3 57279486 57283470 ECH