Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05049 ATGCACCGAAGAGCCCCATTTCCTCGTCTCCTCCTGAATAATGTGTCATGTATGAGAAATGCACAGCAAATTCTGCGTCATGTGAATGTCTCTCTTCATGATGGAGGGGCGCTTGTGCTAACAGGCGCAAATGGGTCGGGGAAGACAACTTTCCTGCGCATGTTAGCTGGGTTTTCTCGTCCTTCTGCAGGCCAGATCCTTTGGAATGGCCATGACATACAACAATCTGCAATATTCCATCAGTATAAGCTTCAACTTAACTGGCTTTCTCTCAAGGACGCCATTAATGATAAGTTCACAGTTCTTAACAATGTACAGTGGTTTGAAGTTCTTGAGAACAAGGAAGGGAAGGCTATGGCTGCGGTGGAGTTGATGGGACTTGGAAGATTAGCTAATGAAAAACCAAGGATGCTTTCTATGGGTCAGCGTAAAAGACTACAACTTGCCAGGTTGCTGGCAATTGATCGTCCCATATGGTTGCTGGATGAGCCTTCAGTTGCATTAGACGAAGAAGGAGTAAAGTTACTTGAGTATATCATTGCAGAACATAGGAAACACGGAGGAATTGTGATTGTGGCCACTCATCTACCCATTGAGATAGAAGATTCCATGGTTTTGAAACTTCCACCAAGGTTTCCCAGGAGGATGACCCATGTGGATATGCTTGATCGGGCAGATATGAGTTAA 687 0.4483 MHRRAPFPRLLLNNVSCMRNAQQILRHVNVSLHDGGALVLTGANGSGKTTFLRMLAGFSRPSAGQILWNGHDIQQSAIFHQYKLQLNWLSLKDAINDKFTVLNNVQWFEVLENKEGKAMAAVELMGLGRLANEKPRMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDEEGVKLLEYIIAEHRKHGGIVIVATHLPIEIEDSMVLKLPPRFPRRMTHVDMLDRADMS 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05049 228 SMART AAA_5 34 222 IPR003593 GO:0016887
Viun3g05049 228 PANTHER ABC TRANSPORTER I FAMILY MEMBER 1 6 222 IPR005895 GO:0017004|GO:0022857
Viun3g05049 228 Gene3D - 5 208 IPR027417 -
Viun3g05049 228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 199 IPR027417 -
Viun3g05049 228 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 10 228 IPR003439 GO:0005524
Viun3g05049 228 Pfam ABC transporter 25 165 IPR003439 GO:0005524
Viun3g05049 228 NCBIfam heme ABC exporter ATP-binding protein CcmA 12 208 IPR005895 GO:0017004|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05049 Viun-Chr3 57245280 57247338 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05049 23 177 Calmodulin-binding Proteins AT2G36910 28.070 3.92e-11 60.5