Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05045 ATGGTGGAAGAAGACCATTTTCCTGTGGGTTTGCGTGTACTTGCCGTTGATGACGATCGAACTTATCTCACAGTGTTGGAGAATCTGCTTCGCAAATGCCAGTATAATGTTACTGCAACTACTCAATCAGTGAAGGCGCTAGAAATGCTGAGGAAAAACAGAAACAAGTTTGACCTTGTTATCAGTGATGTGAATATGCCAGAAATGGATGGGTTTAAGCTGCTTCAGCATGTGGGACTTGAGACGGACCTACCCGTTATCATGTTGTCAGGGTACGGTGATAAAGAACGGGTGATGAAAGGTGTCATATATGGTGCTTGTGACTTTTTAACAAAACCAGTTCGAATTCAAGAGTTACAGAACATATGGCAGCATGTAGTGAGGAGGAAGATTGATAGCAAGGATAAGAATAAGACTGCAAGTGAAGAAAAAGACTGCAGTATGGCACATAAGTTTGCAAATGAGGAGGAACCATGCACTGTTGCTGGGGAATGTAGTCAAGCCTTGGCACCAAAAACTTATGCTAACCAGAATATAAAAGTGGATCACAAAAGGAAAGAACGTTGTGAGGCTGAGGAAATTGAAGAAGATGATAAAGAGAACGATGAAACCTCCAATCAGAAGAAATCTCGTTTAGTTTGGGATACTGAGTTGCACAACAAATTTCTTGCTGCCATTAATCAGCTCGGAATTGACAAGGCTTTCCCCAAGAAAATACTTGACTTGATGAATATCGATGGACTTTCAAGAGAAAACGTAGCAAGCCATCTCCAGAAATTCAGACTCGGTCTCAAAAAGCCTAATCCTTACCACCGTATGGGTTCAGTTGATTGCTTTCGCACGTCATCTGAATCAGGAGCAATGTTAAGCACCACATTACCATCATATGCATATGCACATGGTGGAAGGTTTAGTGTGTTAAACTCTCCATCCAGCTTGAACACGAGAGGAATGAACTCATCTGCATTTGTTCAGGCTTCTGAGTCTCCAAACATTAACAGCAGCTCCATAAAAACACATGGAAACATGCACTCGTCTATATTTTCTGCAAACCAAGCCTCAAGCTTATTGCAGGGCATTCCAAATCCAATGGAGGCTAACCGATTTAAGCCGAACAACTCAACAGCTGGTATTAGGAGGTTTGATCTACTTGATCACTCAGCTGCACTTAAAGATTTCTCTAGTTTCTCGGAAAATAGAGCCACTGTTAGAAATGCAGCAAATATATCTCTTCCTGGTCTCTCCAATAATCATTTACTTTTTCAAGGAATTTCCCAGCATAAACATCATTCTGAAGCATTCAGAAATCATTCTTCTCTTGGAGCTGCTGCTGTGAAAACACAATCTTTTGATCCAAACTCCTGTGGTTCTTCTAAAATGGGGGATGATTATGACAACAAAAGGTGGCGGGGAGCAGCTCCGATATCTACCTTTCCTTCCAATACTTCTGCTTTCAGTAACGTTTTCAGTAATGATCAACTACTTCAGCATAACTTCAAATTGCCCTCATCCACTTTTTGCAGTAGGAACAGTCCAGTTGGTTTTTCTTCCAGTGTTCCTTTGGAGGATGATATCCTAGGTGAGATGCTGCACCAAGAAGGCTTACTTGGGAATATCTTACTAGCTTCGTGTCACACCCAGCATAACCAGGGTGGTTGCAGCAAAGACATGAATCAAACCTTCAATTCCATAAATCCTGTCATTTCTCCTAATGGAGGCACTAGTTCCTTGGGACATAGCTATGAACAAAATAGTACAATTGACAATAAGAGAATTGATGCATCTTTGGTCGGCCAAATGAATGGGGTTAATCCATCATCAATCACACAGTGCAGTGAAGGTGAGAATTTCTATTCAATGAAGTCAAATGATGCGTATGTTTTGCAGAGCATGAAATCCGATGAAGCACTGGTGCAGAATAGTTTGGACTCCTTGGATGACATAATGAATGAAATAGACGAACAGGACCTGAATGCGATTATGTTGATGAATGGAGACATAGAGTTTGATGCTTACCATGATGGACTATGCAACTGA 2037 0.4119 MVEEDHFPVGLRVLAVDDDRTYLTVLENLLRKCQYNVTATTQSVKALEMLRKNRNKFDLVISDVNMPEMDGFKLLQHVGLETDLPVIMLSGYGDKERVMKGVIYGACDFLTKPVRIQELQNIWQHVVRRKIDSKDKNKTASEEKDCSMAHKFANEEEPCTVAGECSQALAPKTYANQNIKVDHKRKERCEAEEIEEDDKENDETSNQKKSRLVWDTELHNKFLAAINQLGIDKAFPKKILDLMNIDGLSRENVASHLQKFRLGLKKPNPYHRMGSVDCFRTSSESGAMLSTTLPSYAYAHGGRFSVLNSPSSLNTRGMNSSAFVQASESPNINSSSIKTHGNMHSSIFSANQASSLLQGIPNPMEANRFKPNNSTAGIRRFDLLDHSAALKDFSSFSENRATVRNAANISLPGLSNNHLLFQGISQHKHHSEAFRNHSSLGAAAVKTQSFDPNSCGSSKMGDDYDNKRWRGAAPISTFPSNTSAFSNVFSNDQLLQHNFKLPSSTFCSRNSPVGFSSSVPLEDDILGEMLHQEGLLGNILLASCHTQHNQGGCSKDMNQTFNSINPVISPNGGTSSLGHSYEQNSTIDNKRIDASLVGQMNGVNPSSITQCSEGENFYSMKSNDAYVLQSMKSDEALVQNSLDSLDDIMNEIDEQDLNAIMLMNGDIEFDAYHDGLCN 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05045 678 SUPERFAMILY Homeodomain-like 207 266 IPR009057 -
Viun3g05045 678 ProSiteProfiles Response regulatory domain profile. 12 127 IPR001789 GO:0000160
Viun3g05045 678 SUPERFAMILY CheY-like 10 134 IPR011006 -
Viun3g05045 678 SMART REC_2 11 123 IPR001789 GO:0000160
Viun3g05045 678 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 265 IPR017930 -
Viun3g05045 678 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 311 IPR045279 GO:0009736
Viun3g05045 678 Pfam Response regulator receiver domain 13 121 IPR001789 GO:0000160
Viun3g05045 678 Gene3D - 205 266 - -
Viun3g05045 678 PIRSF RR_ARR_type-B 1 676 IPR017053 GO:0003677|GO:0003700|GO:0009736
Viun3g05045 678 FunFam Two-component response regulator 205 267 - -
Viun3g05045 678 CDD REC_typeB_ARR-like 13 127 - -
Viun3g05045 678 NCBIfam myb-like DNA-binding domain, SHAQKYF class 209 262 IPR006447 GO:0003677
Viun3g05045 678 Gene3D - 11 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05045 Viun-Chr3 57227899 57231364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05045 5 373 Response Regulator Gene Family AT2G25180 44.473 1.14e-93 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun3g05045 Response_reg 2.7e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05045 - K14491 vun:114177568 1340.1