LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun3g05041	ATGTCGCCCAGAAAAGTTGTTCTCCTCATCACTTTTCTGATGTTCCAATCCTCATCAGAAGAAGCTTCTGAATCATGGTTCAAAATCGGTTACTGGTACAGCGGCAGCAACTCTGCAGTATCCGATATAAACTCTGCGCTCTACACTCATCTCATATGCGCCTTCGCACAAGTCAACACTTCCACCTTCCAAATCTCCCTCCCCTCAACCAACCACCAACCCTTCTCCACTTTCACACACACCGTCAAACTCAAAAACCCTTCCATCACCACTCTCCTCTCCACCGGCGGCGACCAAAACACCGCCGCCATCCGATCCATGCTCTCCAACGCCTCTTCCAGGAAACCCTTCATCCAATCTTCCATCACAATGGCCAGACTCTACGCCTTTCAGGGCCTCGACCTTTCCTGGTCCACCATCCAAACATCCTCTGACGCAGACAACCTCGGACACTTTTTCCAAGAATGGCGGCTTGCGGCAAAATCTGAAGCCCAAGCTAATAACTCTTCACTCCCAGAACTGATCCTAACTGCTGCAGTTCAAGCTTCACCAGATTTGAATAAAGGGTCCTACCCAGTGGACTCGATCAGAAGTAACCTCAACTGGGTACATGTTAATACCTACTCCTACCGTACACCCATGTCGCAGAACTTCACTGCTGCACCTTCAGCTCTGTATGACCCTCATGATGTTACTCACATCAACACGGACTACTATATCAGGGCTTGGATTGGGAAGGGTTTAGATGCGAAGAAGTTGATTTTGGGTTTGGCTTTCTTCGGGTGTGCATGGAAACTCCAAAATCATGATAGCAACACAATAGGAGCAGTTGCAACTGGTCCGGCAGATGATACCGACCAAGGGTTCATAAGCTACAGGGACATTAAAGATAAGGTTCGGGAAAATGGGGTTGCAGTACATTACAATGAGAGTTATGTTACAAATTACTGCATGTTTGGATCGACATGGATTGGCTATGACGATGTTGAGGCTGTTGAGAGGAAGGTGTTGTATGCCCGAGATATGGGGTTGCTTGGTTACTATGTTTGGCAAATTTCCCAAGATGACCACAATTCCACACTCGCTCGCGCAGCAGCTGAACAGGTTAAAGACGGCAAAGAGGAGCAATGGAAATTGTTAGTGATAATTTTGAGCGTAACTGCTACCGTTATTCTCATGTTAGGTATCTCATTCTACTTTCAAAAGAAGAGAATATTCAGAAGAACTGGGACAATGCTGAATGCTGCAAAAGGTTGTTGGACTAAAACCTTGAATAACAAAGAAGCTGCAGAACCTTTTCATGGGAATACTCCAGATTTACATGGCTATAGATTTTCTGACATTAAAGCGGCTACATGTGACTTTTCACCTCAAAATAAGATAGGACAAGGTGGTTATGGTCCTGTTTACAAGGGCATCCTACCTGATGATGAAGAAATAGCTGTGAAAAAATTATCAAAAGCTTCCACACAAGGATTCCAGGAATTCAAAAATGAGGTAACACTAACGGCAAAGCTACAACATGTGAATCTTGTTCGGTTGTTAGGTTTCTGCGTTGAACGAGGGGAGCAGATGCTGGTGTATGAGTACATGCCTAATAAGAGCTTGGACTTCTACCTTTTTGATGCTATGAGACGACATTTGTTGGATTGGAATAAGCGCGTTGATATCATCGAGGGAGTTACGCAAGGTCTTCTTTATCTTCAAGAATATTCGAGATTCACCATAATTCACAGAGACATAAAAGCTAGCAATGTTTTGTTAGACGCAGAGATGAAGCCAAAGATTTCAGACTTTGGGATGGCAAGAATATTCATAAAAAATGAACAGGAGGCCAACACAAACAAGATTGTGGGAACATATGGTTATGTTCCTCCCGAATACGTAAGAGAAGGTGTGTACTCAACCAAATCTGATGTGTATAGTTTTGGGGTGCTACTTCTACAAATTATAAGTGGCAAGAAGACACATGGTTTTTACGGAGAGAAGGAAGATTTAAAGCTCTTGGAGTATGCATATGAATTATGGAAAGAAGGAAAGGGTATGGAGGTGATGGATGATTCATTGGATGATAGAAATTCAGAGTGTAAACTAGTGAGATGCATGGAAATCGCTTTGTTATGTGTCCAAGAACATGCAAGTGATAGGCCTTCAATGCTACAAGTTTGTGCAATGTTGAGAAACCAAGATAAATCTCATGCCATCCCCAAAAAACCAGCATTTTCAAGAGTGGAAGACAAGGACGATGTGAATGAGTGTCAAACGTTGCAAAATGTTTCAGTCGACGATGGAACCATCACTCAAATTGTTGGCAGATAG	2319	0.4334	MSPRKVVLLITFLMFQSSSEEASESWFKIGYWYSGSNSAVSDINSALYTHLICAFAQVNTSTFQISLPSTNHQPFSTFTHTVKLKNPSITTLLSTGGDQNTAAIRSMLSNASSRKPFIQSSITMARLYAFQGLDLSWSTIQTSSDADNLGHFFQEWRLAAKSEAQANNSSLPELILTAAVQASPDLNKGSYPVDSIRSNLNWVHVNTYSYRTPMSQNFTAAPSALYDPHDVTHINTDYYIRAWIGKGLDAKKLILGLAFFGCAWKLQNHDSNTIGAVATGPADDTDQGFISYRDIKDKVRENGVAVHYNESYVTNYCMFGSTWIGYDDVEAVERKVLYARDMGLLGYYVWQISQDDHNSTLARAAAEQVKDGKEEQWKLLVIILSVTATVILMLGISFYFQKKRIFRRTGTMLNAAKGCWTKTLNNKEAAEPFHGNTPDLHGYRFSDIKAATCDFSPQNKIGQGGYGPVYKGILPDDEEIAVKKLSKASTQGFQEFKNEVTLTAKLQHVNLVRLLGFCVERGEQMLVYEYMPNKSLDFYLFDAMRRHLLDWNKRVDIIEGVTQGLLYLQEYSRFTIIHRDIKASNVLLDAEMKPKISDFGMARIFIKNEQEANTNKIVGTYGYVPPEYVREGVYSTKSDVYSFGVLLLQIISGKKTHGFYGEKEDLKLLEYAYELWKEGKGMEVMDDSLDDRNSECKLVRCMEIALLCVQEHASDRPSMLQVCAMLRNQDKSHAIPKKPAFSRVEDKDDVNECQTLQNVSVDDGTITQIVGR	772

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun3g05041	772	Pfam	Glycosyl hydrolases family 18	29	355	IPR001223	GO:0005975
	Viun3g05041	772	CDD	STKc_IRAK	461	726	-	-
	Viun3g05041	772	ProSiteProfiles	Protein kinase domain profile.	455	736	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun3g05041	772	Pfam	Protein tyrosine and serine/threonine kinase	458	725	IPR001245	GO:0004672\|GO:0006468
	Viun3g05041	772	ProSiteProfiles	Glycosyl hydrolases family 18 (GH18) domain profile.	26	372	IPR001223	GO:0005975
	Viun3g05041	772	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	576	588	IPR008271	GO:0004672\|GO:0006468
	Viun3g05041	772	FunFam	Uncharacterized protein	531	736	-	-
	Viun3g05041	772	Gene3D	Transferase(Phosphotransferase) domain 1	531	750	-	-
	Viun3g05041	772	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	422	530	-	-
	Viun3g05041	772	Gene3D	-	259	326	IPR029070	-
	Viun3g05041	772	SMART	2g34	26	355	IPR011583	GO:0008061
	Viun3g05041	772	Gene3D	Phosphorylase Kinase; domain 1	416	530	-	-
	Viun3g05041	772	FunFam	Class V chitinase CHIT5b	259	326	-	-
	Viun3g05041	772	SUPERFAMILY	Chitinase insertion domain	260	326	IPR029070	-
	Viun3g05041	772	SUPERFAMILY	(Trans)glycosidases	28	369	IPR017853	-
	Viun3g05041	772	Gene3D	Glycosidases	40	356	-	-
	Viun3g05041	772	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	87	765	-	-
	Viun3g05041	772	SMART	serkin_6	455	726	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun3g05041	772	SUPERFAMILY	Protein kinase-like (PK-like)	439	744	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun3g05041	Viun-Chr3	57190840	57197459	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun3g05041	437	741	Receptor kinase-like Gene Family	AT4G11480	53.268	5.93e-111	350

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun3g05041		Glyco_hydro_18	1.8e-62	CL0058

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun3g05041	-		-	vun:114175226	1560.43