LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun3g05040	ATGCCTTCTAATCTCATCGTTTTCTGCACTTTCTTTCTCACCTTATTCTCTTTCAAATCTCATTCCTTTGCAGATAACCCTTCCTGGGTGAAAGCCGGGTATTACTATTCCGGCAATGAAATTTCTGCTTCGGACATCAAAGCCACGCTTTTCACTCACCTTTTATGTGCTTTTGCCTTCATAAACCCCACCAATTACAACATCTTCATCAACTCTTCGGAGGAGCAGAAGTTCTCCACCTTCACCAAAACGGTGAAGCTGCAAAACCCATCTGTTTCAACGCTTTTATCCATCTGGGGTGGCAGGGAGGACTCTTCGGTGTTCACCTCAATGCTAAATGAATCTTCTCACAGGAAGCTCTTCATTGATTCTTCCATCAGAACAGCGAGGTTCTATGGCTTTCATGGCATAGACCTTACTGGGGCGAGGCCAAGTTCCGAGGTTGCCAATTTCGGAACCCTTTTGAAGGAATGGCGTGCTGCAATAACTTCTGAGGCAAGAAACTCTACCAAGCCAGAGCTGTTGTTGGTGATGGCAGGTTACTACCTTAAAGCTTCGGATTCCTTGAGTTACCCCTTTGATTCGATGCAGGAGAATTTGGACTGGGTGCACTTTGTGGCTTATGATTACTATCTCCCTAAGATGGCCAGTGCCACGGCTTTTCATGCGGCTTTGTATGGTTCATCTGATTGGGATAACACTGATTCCGGCATCAGAGAGTGGAGGAGGAGGGGGTTTTCTTCTAAGAAGCTGTTAATTGGGTTGCCTTATCATGGATATGCGTGGAAACTTGTGACTCCTGCAGCAAACGGTGGCGTGGGAACACCAGCTTCGGGACCTGCCATTACAATGGATGGTTCCATGGGCTACAAGTTCATAAAGAGTTACATCAAAAGCTTTGGAAATGGAGTTGTTTCACGCTACAATGCAAGTTTTGTGGTGAACCAGTTCACTGTTGCGTCCACCACTTGGGTTAATTTTGATGATGTGGAGGTCATCAGGGCCAAAGTTTTTTATGCAAGGGAAAATGGGTTACTTGGTTACAACGTGTTCCAAGTAGGCAATGACGAAAATTGGGAACTTTCAATAGGTGCAGCTCAAGTTGTAGATGAAGAAATTAAAGATCATCACAAGAGGAGAGTGCTGATAATTGTTCTGCTTGCTGTTCTAACTTTGGTCCTCCTGTTGGGAATAGTATTTTGCTACTACAACAGAGGGGCTGTAGCCAGTGTTACCAATCTATTGTATAAACTGAGATATTTACCAGAAGCAGAAAAGGATATCGATGCAAACGGTTCTGATTTGACAGTATTCAGTTATCTCACTATTAAAGCGGCAACGAGTAACTTCTCAAAAGACAATAGGCTTGGAGAGGGTGGATTTGGCACAGTGTACAAGGGCAAATTACGGAAGGGTCAGGAAATAGCTGTGAAAAGACTCTCAGAAACCTCAAATCAAGGCCCTGAAGAATTCAAGAACGAAATCACACTTACAGCAAGACTACAACATGTGAATTTAGTTAGACTTCTGGGATACTGCACAAAAAAGAACGAGAAGATTCTGATCTATGAATACTTGCAAAACAAAAGCTTAGATAATTTCCTCTTTGATCCAACGAAATCAATTCTCTTAGACTGGAATAAACGTGTCAATATCATTGAAGGCGTTACTCAAGGCCTTCTTTATCTCCAAGAGTACTCAAATTTTACTATAATTCACCGAGATCTTAAAGCTAGTAACGTTTTACTAGATGACAATATGAATCCGAAGATATCGGATTTTGGCATGGCTAGAATTTTCAGAAAATATGACCTCGAAGCAAACACAGAAAGGATAGTTGGAACATATGGATACGTACCTCCTGAGTACGTGAGAAAAGGCATATACTCAACGAAGTACGATGTTTACAGTTTTGGAGTTCTTCTCTTACAAATCATAAGTGGAAAGAGGACTTCATGTTATTATGGCCTGCATGAAAATATAACCCTCTTGGAATATGCATATGAACTGTGGAGGGAAGGAAGAGGTGTAGAGTTTGTTGACCCTTCATTGGATGATACATCATCTCCTTGTAAAATCATGAGATGCATGCAGGTAGCTCTACTGTGTGTTCAGGAAAACTCTGTGGATAGACCTTCCATGTTGGAAGTTGATTCACTGTTGAAGAATGAAAGTGCAGTTATTGGTACTCCCAAAGTTCCTGCTTTTTCAGTTCAGAAACGTGGAGATGAGGAAGAAAGATCTCACAGCGGAATCAACTTTTATTCAATCAATGATGTTACAATTTCTCAACTGGCACCAAGATGA	2307	0.4183	MPSNLIVFCTFFLTLFSFKSHSFADNPSWVKAGYYYSGNEISASDIKATLFTHLLCAFAFINPTNYNIFINSSEEQKFSTFTKTVKLQNPSVSTLLSIWGGREDSSVFTSMLNESSHRKLFIDSSIRTARFYGFHGIDLTGARPSSEVANFGTLLKEWRAAITSEARNSTKPELLLVMAGYYLKASDSLSYPFDSMQENLDWVHFVAYDYYLPKMASATAFHAALYGSSDWDNTDSGIREWRRRGFSSKKLLIGLPYHGYAWKLVTPAANGGVGTPASGPAITMDGSMGYKFIKSYIKSFGNGVVSRYNASFVVNQFTVASTTWVNFDDVEVIRAKVFYARENGLLGYNVFQVGNDENWELSIGAAQVVDEEIKDHHKRRVLIIVLLAVLTLVLLLGIVFCYYNRGAVASVTNLLYKLRYLPEAEKDIDANGSDLTVFSYLTIKAATSNFSKDNRLGEGGFGTVYKGKLRKGQEIAVKRLSETSNQGPEEFKNEITLTARLQHVNLVRLLGYCTKKNEKILIYEYLQNKSLDNFLFDPTKSILLDWNKRVNIIEGVTQGLLYLQEYSNFTIIHRDLKASNVLLDDNMNPKISDFGMARIFRKYDLEANTERIVGTYGYVPPEYVRKGIYSTKYDVYSFGVLLLQIISGKRTSCYYGLHENITLLEYAYELWREGRGVEFVDPSLDDTSSPCKIMRCMQVALLCVQENSVDRPSMLEVDSLLKNESAVIGTPKVPAFSVQKRGDEEERSHSGINFYSINDVTISQLAPR	768

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun3g05040	768	SUPERFAMILY	(Trans)glycosidases	32	356	IPR017853	-
	Viun3g05040	768	Gene3D	Glycosidases	44	357	-	-
	Viun3g05040	768	CDD	GH18_plant_chitinase_class_V	27	362	-	-
	Viun3g05040	768	Pfam	Glycosyl hydrolases family 18	34	356	IPR001223	GO:0005975
	Viun3g05040	768	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	571	583	IPR008271	GO:0004672\|GO:0006468
	Viun3g05040	768	SMART	2g34	29	356	IPR011583	GO:0008061
	Viun3g05040	768	FunFam	Uncharacterized protein	425	525	-	-
	Viun3g05040	768	SMART	serkin_6	450	727	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun3g05040	768	Gene3D	Phosphorylase Kinase; domain 1	424	525	-	-
	Viun3g05040	768	SUPERFAMILY	Protein kinase-like (PK-like)	434	719	IPR011009	-
	Viun3g05040	768	FunFam	Uncharacterized protein	526	730	-	-
	Viun3g05040	768	Pfam	Protein tyrosine and serine/threonine kinase	452	717	IPR001245	GO:0004672\|GO:0006468
	Viun3g05040	768	Gene3D	Transferase(Phosphotransferase) domain 1	526	729	-	-
	Viun3g05040	768	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	373	765	-	-
	Viun3g05040	768	CDD	STKc_IRAK	456	723	-	-
	Viun3g05040	768	Gene3D	-	257	327	IPR029070	-
	Viun3g05040	768	ProSitePatterns	Protein kinases ATP-binding region signature.	456	478	IPR017441	GO:0005524
	Viun3g05040	768	ProSiteProfiles	Protein kinase domain profile.	450	721	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun3g05040	768	ProSiteProfiles	Glycosyl hydrolases family 18 (GH18) domain profile.	29	372	IPR001223	GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun3g05040	Viun-Chr3	57181712	57185200	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun3g05040	423	768	Receptor kinase-like Gene Family	AT4G11480	48.451	2.08e-114	358

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun3g05040		Glyco_hydro_18	3.4e-53	CL0058

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun3g05040	-		-	aprc:113847882	1221.07