LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun3g05039	ATGCCTTCTAATCTCATCGTTTTCTGCACTTTCTTTCTCACCTTATTCTCTTTCAAATCTCATTCCTTTGCAGATAACCCTTCCTGGGTGAAAGCCGGGTATTACTATTCCGGCAATGAAATTTCTGCTTCGGACATCAAAGCCACGCTTTTCACTCACCTTTTATGTGCTTTTGCCTTCATAAACCCCACCAATTACAACATCTTCATCAACTCTTCGGAGGAGCAGAAGTTCTCCACCTTCACCAAAACGGTGAAGCTGCAAAACCCATCTGTTTCAACGCTTTTATCCATCTGGGGTGGCAGGGAGGACTCTTCGGTGTTCACCTCAATGCTAAATGAATCTTCTCACAGGAAGCTCTTCATTGATTCTTCCATCAGAACAGCGAGGTTCTATGGCTTTCATGGCATAGACCTTACTGGGGCGAGGCCAAGTTCCGAGGTTGCCAATTTCGGAACCCTTTTGAAGGAATGGCGTGCTGCAATAACTTCTGAGGCAAGAAACTCTACCAAGCCAGAGCTGTTGTTGGTGATGGCAGGTTACTACCTTAAAGCTTCGGATTCCTTGAGTTACCCCTTTGATTCGATGCAGGAGAATTTGGACTGGGTGCACTTTGTGGCTTATGATTACTATCTCCCTAAGATGGCCAGTGCCACGGCTTTTCATGCGGCTTTGTATGGTTCATCTGATTGGGATAACACTGATTCCGGCATCAGAGAGTGGAGGAGGAGGGGGTTTTCTTCTAAGAAGCTGTTAATTGGGTTGCCTTATCATGGATATGCGTGGAAACTTGTGACTCCTGCAGCAAACGGTGGCGTGGGAACACCAGCTTCGGGACCTGCCATTACAATGGATGGTTCCATGGGCTACAAGTTCATAAAGAGTTACATCAAAAGCTTTGGAAATGGAGTTGTTTCACGCTACAATGCAAGTTTTGTGGTGAACCAGTTCACTGTTGCGTCCACCACTTGGGTTAATTTTGATGATGTGGAGGTCATCAGGGCCAAAGTTTTTTATGCAAGGGAAAATGGGTTACTTGGTTACAACGTGTTCCAAGTAGGCAATGACGAAAATTGGGAACTTTCAATAGGTGCAGATGAAGAAATTAAAGATCATCACAAGAGGAGAGTGCTGATAATTGTTCTGCTTGCTGTTCTAACTTTGGTCCTCCTGTTGGGAATAGTATTTTGCTACTACAACAGAGGGGCTGTAGCCAGTGTTACCAATCTATTGTATAAACTGAGATATTTACCAGAAGCAGAAAAGGATATCGATGCAAACGGTTCTGATTTGACAGTATTCAGTTATCTCACTATTAAAGCGGCAACGAGTAACTTCTCAAAAGACAATAGGCTTGGAGAGGGTGGATTTGGCACAGTGTACAAGGGCAAATTACGGAAGGGTCAGGAAATAGCTGTGAAAAGACTCTCAGAAACCTCAAATCAAGGCCCTGAAGAATTCAAGAACGAAATCACACTTACAGCAAGACTACAACATGTGAATTTAGTTAGACTTCTGGGATACTGCACAAAAAAGAACGAGAAGATTCTGATCTATGAATACTTGCAAAACAAAAGCTTAGATAATTTCCTCTTTGATCCAACGAAATCAATTCTCTTAGACTGGAATAAACGTGTCAATATCATTGAAGGCGTTACTCAAGGCCTTCTTTATCTCCAAGAGTACTCAAATTTTACTATAATTCACCGAGATCTTAAAGCTAGTAACGTTTTACTAGATGACAATATGAATCCGAAGATATCGGATTTTGGCATGGCTAGAATTTTCAGAAAATATGACCTCGAAGCAAACACAGAAAGGATAGTTGGAACATATGGATACGTACCTCCTGAGTACGTGAGAAAAGGCATATACTCAACGAAGTACGATGTTTACAGTTTTGGAGTTCTTCTCTTACAAATCATAAGTGGAAAGAGGACTTCATGTTATTATGGCCTGCATGAAAATATAACCCTCTTGGAATATGCATATGAACTGTGGAGGGAAGGAAGAGGTGTAGAGTTTGTTGACCCTTCATTGGATGATACATCATCTCCTTGTAAAATCATGAGATGCATGCAGGTAGCTCTACTGTGTGTTCAGGAAAACTCTGTGGATAGACCTTCCATGTTGGAAGTTGATTCACTGTTGAAGAATGAAAGTGCAGTTATTGGTACTCCCAAAGTTCCTGCTTTTTCAGTTCAGAAACGTGGAGATGAGGAAGAAAGATCTCACAGCGGAATCAACTTTTATTCAATCAATGATGTTACAATTTCTCAACTGGCACCAAGATGA	2295	0.4183	MPSNLIVFCTFFLTLFSFKSHSFADNPSWVKAGYYYSGNEISASDIKATLFTHLLCAFAFINPTNYNIFINSSEEQKFSTFTKTVKLQNPSVSTLLSIWGGREDSSVFTSMLNESSHRKLFIDSSIRTARFYGFHGIDLTGARPSSEVANFGTLLKEWRAAITSEARNSTKPELLLVMAGYYLKASDSLSYPFDSMQENLDWVHFVAYDYYLPKMASATAFHAALYGSSDWDNTDSGIREWRRRGFSSKKLLIGLPYHGYAWKLVTPAANGGVGTPASGPAITMDGSMGYKFIKSYIKSFGNGVVSRYNASFVVNQFTVASTTWVNFDDVEVIRAKVFYARENGLLGYNVFQVGNDENWELSIGADEEIKDHHKRRVLIIVLLAVLTLVLLLGIVFCYYNRGAVASVTNLLYKLRYLPEAEKDIDANGSDLTVFSYLTIKAATSNFSKDNRLGEGGFGTVYKGKLRKGQEIAVKRLSETSNQGPEEFKNEITLTARLQHVNLVRLLGYCTKKNEKILIYEYLQNKSLDNFLFDPTKSILLDWNKRVNIIEGVTQGLLYLQEYSNFTIIHRDLKASNVLLDDNMNPKISDFGMARIFRKYDLEANTERIVGTYGYVPPEYVRKGIYSTKYDVYSFGVLLLQIISGKRTSCYYGLHENITLLEYAYELWREGRGVEFVDPSLDDTSSPCKIMRCMQVALLCVQENSVDRPSMLEVDSLLKNESAVIGTPKVPAFSVQKRGDEEERSHSGINFYSINDVTISQLAPR	764

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun3g05039	764	CDD	STKc_IRAK	452	719	-	-
	Viun3g05039	764	Gene3D	Glycosidases	44	357	-	-
	Viun3g05039	764	CDD	GH18_plant_chitinase_class_V	27	362	-	-
	Viun3g05039	764	ProSiteProfiles	Glycosyl hydrolases family 18 (GH18) domain profile.	29	372	IPR001223	GO:0005975
	Viun3g05039	764	SMART	2g34	29	356	IPR011583	GO:0008061
	Viun3g05039	764	ProSiteProfiles	Protein kinase domain profile.	446	717	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun3g05039	764	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	359	761	-	-
	Viun3g05039	764	SUPERFAMILY	Protein kinase-like (PK-like)	430	715	IPR011009	-
	Viun3g05039	764	FunFam	Uncharacterized protein	522	726	-	-
	Viun3g05039	764	Pfam	Protein tyrosine and serine/threonine kinase	448	713	IPR001245	GO:0004672\|GO:0006468
	Viun3g05039	764	SUPERFAMILY	(Trans)glycosidases	32	356	IPR017853	-
	Viun3g05039	764	Gene3D	Phosphorylase Kinase; domain 1	420	521	-	-
	Viun3g05039	764	Pfam	Glycosyl hydrolases family 18	34	356	IPR001223	GO:0005975
	Viun3g05039	764	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	567	579	IPR008271	GO:0004672\|GO:0006468
	Viun3g05039	764	Gene3D	-	257	327	IPR029070	-
	Viun3g05039	764	Gene3D	Transferase(Phosphotransferase) domain 1	522	725	-	-
	Viun3g05039	764	SMART	serkin_6	446	723	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun3g05039	764	FunFam	Uncharacterized protein	421	521	-	-
	Viun3g05039	764	ProSitePatterns	Protein kinases ATP-binding region signature.	452	474	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun3g05039	Viun-Chr3	57181712	57185200	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun3g05039	419	764	Receptor kinase-like Gene Family	AT4G11480	48.451	2.11e-114	358

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun3g05039		Glyco_hydro_18	3.3e-53	CL0058

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun3g05039	-		-	aprc:113847882	1218.37