Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05038 ATGCCTTCTAATCTCATCGTTTTCTGCACTTTCTTTCTCACCTTATTCTCTTTCAAATCTCATTCCTTTGCAGATAACCCTTCCTGGGTGAAAGCCGGGTATTACTATTCCGGCAATGAAATTTCTGCTTCGGACATCAAAGCCACGCTTTTCACTCACCTTTTATGTGCTTTTGCCTTCATAAACCCCACCAATTACAACATCTTCATCAACTCTTCGGAGGAGCAGAAGTTCTCCACCTTCACCAAAACGGTGAAGCTGCAAAACCCATCTGTTTCAACGCTTTTATCCATCTGGGGTGGCAGGGAGGACTCTTCGGTGTTCACCTCAATGCTAAATGAATCTTCTCACAGGAAGCTCTTCATTGATTCTTCCATCAGAACAGCGAGGTTCTATGGCTTTCATGGCATAGACCTTACTGGGGCGAGGCCAAGTTCCGAGGTTGCCAATTTCGGAACCCTTTTGAAGGAATGGCGTGCTGCAATAACTTCTGAGGCAAGAAACTCTACCAAGCCAGAGCTGTTGTTGGTGATGGCAGGTTACTACCTTAAAGCTTCGGATTCCTTGAGTTACCCCTTTGATTCGATGCAGGAGAATTTGGACTGGGTGCACTTTGTGGCTTATGATTACTATCTCCCTAAGATGGCCAGTGCCACGGCTTTTCATGCGGCTTTGTATGGTTCATCTGATTGGGATAACACTGATTCCGGCATCAGAGAGTGGAGGAGGAGGGGGTTTTCTTCTAAGAAGCTGTTAATTGGGTTGCCTTATCATGGATATGCGTGGAAACTTGTGACTCCTGCAGCAAACGGTGGCGTGGGAACACCAGCTTCGGGACCTGCCATTACAATGGATGGTTCCATGGGCTACAAGTTCATAAAGAGTTACATCAAAAGCTTTGGAAATGGAGTTGTTTCACGCTACAATGCAAGTTTTGTGGTGAACCAGTTCACTGTTGCGTCCACCACTTGGGTTAATTTTGATGATGTGGAGGTCATCAGGGCCAAAGTTTTTTATGCAAGGGAAAATGGGTTACTTGGTTACAACGTGTTCCAAGTAGGCAATGACGAAAATTGGGAACTTTCAATAGGTGCAGCTCAAGTTGTAGATGAAGAAATTAAAGATCATCACAAGAGGAGAGTGCTGATAATTGTTCTGCTTGCTGTTCTAACTTTGGTCCTCCTGTTGGGAATAGTATTTTGCTACTACAACAGAGGGGCTGTAGCCAGTGTTACCAATCTATTGTATAAACTGAGATATTTACCAGAAGCAGAAAAGGATATCGATGCAAACGGTTCTGATTTGACAGTATTCAGTTATCTCACTATTAAAGCGGCAACGAGTAACTTCTCAAAAGACAATAGGCTTGGAGAGGGTGGATTTGGCACAGTGTACAAGGGCAAATTACGGAAGGGTCAGGAAATAGCTGTGAAAAGACTCTCAGAAACCTCAAATCAAGGCCCTGAAGAATTCAAGAACGAAATCACACTTACAGCAAGACTACAACATGTGAATTTAGTTAGACTTCTGGGATACTGCACAAAAAAGAACGAGAAGATTCTGATCTATGAATACTTGCAAAACAAAAGCTTAGATAATTTCCTCTTTGATCCAACGAAATCAATTCTCTTAGACTGGAATAAACGTGTCAATATCATTGAAGGCGTTACTCAAGGCCTTCTTTATCTCCAAGAGTACTCAAATTTTACTATAATTCACCGAGATCTTAAAGCTAGTAACGTTTTACTAGATGACAATATGAATCCGAAGATATCGGATTTTGGCATGGCTAGAATTTTCAGAAAATATGACCTCGAAGCAAACACAGAAAGGATAGTTGGAACATATGGATACGTACCTCCTGAGTACGTGAGAAAAGGCATATACTCAACGAAGTACGATGTTTACAGTTTTGGAGTTCTTCTCTTACAAATCATAAGTGGAAAGAGGACTTCATGTTATTATGGCCTGCATGAAAATATAACCCTCTTGGAATATGTAGCTCTACTGTGTGTTCAGGAAAACTCTGTGGATAGACCTTCCATGTTGGAAGTTGATTCACTGTTGAAGAATGAAAGTGCAGTTATTGGTACTCCCAAAGTTCCTGCTTTTTCAGTTCAGAAACGTGGAGATGAGGAAGAAAGATCTCACAGCGGAATCAACTTTTATTCAATCAATGATGTTACAATTTCTCAACTGGCACCAAGATGA 2211 0.4179 MPSNLIVFCTFFLTLFSFKSHSFADNPSWVKAGYYYSGNEISASDIKATLFTHLLCAFAFINPTNYNIFINSSEEQKFSTFTKTVKLQNPSVSTLLSIWGGREDSSVFTSMLNESSHRKLFIDSSIRTARFYGFHGIDLTGARPSSEVANFGTLLKEWRAAITSEARNSTKPELLLVMAGYYLKASDSLSYPFDSMQENLDWVHFVAYDYYLPKMASATAFHAALYGSSDWDNTDSGIREWRRRGFSSKKLLIGLPYHGYAWKLVTPAANGGVGTPASGPAITMDGSMGYKFIKSYIKSFGNGVVSRYNASFVVNQFTVASTTWVNFDDVEVIRAKVFYARENGLLGYNVFQVGNDENWELSIGAAQVVDEEIKDHHKRRVLIIVLLAVLTLVLLLGIVFCYYNRGAVASVTNLLYKLRYLPEAEKDIDANGSDLTVFSYLTIKAATSNFSKDNRLGEGGFGTVYKGKLRKGQEIAVKRLSETSNQGPEEFKNEITLTARLQHVNLVRLLGYCTKKNEKILIYEYLQNKSLDNFLFDPTKSILLDWNKRVNIIEGVTQGLLYLQEYSNFTIIHRDLKASNVLLDDNMNPKISDFGMARIFRKYDLEANTERIVGTYGYVPPEYVRKGIYSTKYDVYSFGVLLLQIISGKRTSCYYGLHENITLLEYVALLCVQENSVDRPSMLEVDSLLKNESAVIGTPKVPAFSVQKRGDEEERSHSGINFYSINDVTISQLAPR 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05038 736 Gene3D - 257 327 IPR029070 -
Viun3g05038 736 ProSitePatterns Serine/Threonine protein kinases active-site signature. 571 583 IPR008271 GO:0004672|GO:0006468
Viun3g05038 736 SMART 2g34 29 356 IPR011583 GO:0008061
Viun3g05038 736 Gene3D Glycosidases 44 357 - -
Viun3g05038 736 Gene3D Phosphorylase Kinase; domain 1 424 525 - -
Viun3g05038 736 Pfam Protein kinase domain 451 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05038 736 SMART serkin_6 450 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05038 736 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 374 733 - -
Viun3g05038 736 SUPERFAMILY (Trans)glycosidases 32 356 IPR017853 -
Viun3g05038 736 FunFam Uncharacterized protein 425 525 - -
Viun3g05038 736 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 526 617 - -
Viun3g05038 736 SUPERFAMILY Protein kinase-like (PK-like) 434 687 IPR011009 -
Viun3g05038 736 Gene3D Transferase(Phosphotransferase) domain 1 526 697 - -
Viun3g05038 736 ProSitePatterns Protein kinases ATP-binding region signature. 456 478 IPR017441 GO:0005524
Viun3g05038 736 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 29 372 IPR001223 GO:0005975
Viun3g05038 736 Pfam Glycosyl hydrolases family 18 34 356 IPR001223 GO:0005975
Viun3g05038 736 ProSiteProfiles Protein kinase domain profile. 450 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05038 Viun-Chr3 57181712 57185202 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05038 423 736 Receptor kinase-like Gene Family AT4G23290 49.577 9.98e-102 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun3g05038 Glyco_hydro_18 3.1e-53 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05038 - - aprc:113847882 1148.27