Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05029 ATGGAGCCACAGAAACTCACCGACTACGAGCTCAAGCGACTCGAGAACATTCGCCGCAACGATGAGATGATGGCAGCCCTCAAACTCCATTCCAGAGCCACCCAACTCTCCAATTTCAAGCGTCAAAGAGTTGAAGCCAAATCCACCCGCGTGAAATTGGAAAAGAAACCTAAAACCGAAACCCCAATTGTCATCAGAGTCAGGCGCTCCCTGCGAACCAGGGGTATTCCACCAGATTTTGAAGGTCTTGACGGAGATTCCGTCGCCCCCACCGCTCCCTCCAAAGAAGATCCGCCTTCCGTCGTAAGTTTGGGTCCCCTTTCCATGGCCAATGCTCGTGAAAGTGCTCACTCTGATAGTTCCTTCATTGAATCGCTAATGGGTATGGCCCAAGATGGCAATGTTCCAAAAGGGGATGTGGGGGGCTCCCTTGAATTGAAATCTCTGTCTTTGGATCCCGAGAATATTGCGCGGGTTGTTTCTGGAAGGATAACCAATGTCAGTTTTTTCCCTTCAAGTAGTGTCAACATGATTGCCGCGGGTAACAAGTTTGGGAATATTGGGTTTTGGAATATGGGAGAAAGTGAGGTTCATTTATACCGTCCTCATAATGCTCCCATTTCTGGGATTTTGATTCAACCGCATTGTTGTTCCAAGATATACACAAGTTGTTATGATGGAGTTCTTCGGCTAATGGATGCTGAGAAGGAAATCTTTGATCTGGTGTTTGAGAGTGATGAAAAAATATATGCTCTTTCTCAACCACCGAATGACACAAACTGCCTATATCTTGCTGAGGGTTCTGGAGGTTTGACTATTTGGGATAACAGGGTGGGAAAACGTTCGTCGCACTGGGATTTGCATGACAGTAGGATTAACACCATAGATTTCAACTGTCAAAACCCTCACATTGTAGCTACTAGTTCCTCTGATGCAACTGCCTGCACCTGGGATTTGAGATATACTAATAGGAAGGATCTCACAGCCTTGAGGACATTTACCCACAAAAGATCTGTCCAATCTGCTTACTTCTCTCCTTCTGGAAGTAGCCTTGCAACTACAAGCTTGGACAACACTATTGGTATTCACAGTGGAGTTAACTTGGAGGATACGGCTCTTATTTCTCATTTTAATCAGACTGGCAGATGGCTTTCTACATTCAGAGCGAAATGGGGTTGGGATGACAAATATCTCTTCATTGGAAATATGAATAGAGGGGTTGATGTGGTCTCAGCAGTTCAAAGGAAAATAGTTATGACGTTAGAGAGCCCACACATGTCTGCCATTCCTTGCAGATTCGATATAAACTGTTACGAGGTTGGGATGCTTGTAGGAGCTACAAGTGGAGGGCAGCTTTATGTATGGACATCACGCTAG 1377 0.4539 MEPQKLTDYELKRLENIRRNDEMMAALKLHSRATQLSNFKRQRVEAKSTRVKLEKKPKTETPIVIRVRRSLRTRGIPPDFEGLDGDSVAPTAPSKEDPPSVVSLGPLSMANARESAHSDSSFIESLMGMAQDGNVPKGDVGGSLELKSLSLDPENIARVVSGRITNVSFFPSSSVNMIAAGNKFGNIGFWNMGESEVHLYRPHNAPISGILIQPHCCSKIYTSCYDGVLRLMDAEKEIFDLVFESDEKIYALSQPPNDTNCLYLAEGSGGLTIWDNRVGKRSSHWDLHDSRINTIDFNCQNPHIVATSSSDATACTWDLRYTNRKDLTALRTFTHKRSVQSAYFSPSGSSLATTSLDNTIGIHSGVNLEDTALISHFNQTGRWLSTFRAKWGWDDKYLFIGNMNRGVDVVSAVQRKIVMTLESPHMSAIPCRFDINCYEVGMLVGATSGGQLYVWTSR 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05029 458 Gene3D - 155 458 IPR015943 GO:0005515
Viun3g05029 458 ProSitePatterns Trp-Asp (WD) repeats signature. 305 319 IPR019775 -
Viun3g05029 458 SMART WD40_4 150 191 IPR001680 GO:0005515
Viun3g05029 458 SMART WD40_4 278 318 IPR001680 GO:0005515
Viun3g05029 458 SMART WD40_4 326 364 IPR001680 GO:0005515
Viun3g05029 458 SMART WD40_4 193 233 IPR001680 GO:0005515
Viun3g05029 458 PANTHER UNCHARACTERIZED 4 457 - -
Viun3g05029 458 FunFam WD repeat-containing protein 76 155 457 - -
Viun3g05029 458 MobiDBLite consensus disorder prediction 75 103 - -
Viun3g05029 458 Coils Coil 36 56 - -
Viun3g05029 458 SUPERFAMILY WD40 repeat-like 139 455 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05029 Viun-Chr3 57076281 57078844 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05029 161 409 U-box Gene Family AT1G04510 22.814 4.81e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05029 K24755 - gmx:100800122 749.969