Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05028 ATGAAACTCACCGACTACGAGCTCAAGCGACTCGAGAACATTCGCCGCAACGATGAGATGATGGCAGCCCTCAAACTCCATTCCAGAGCCACCCAACTCTCCAATTTCAAGCGTCAAAGAGTTGAAGCCAAATCCACCCGCGTGAAATTGGAAAAGAAACCTAAAACCGAAACCCCAATTGTCATCAGAGTCAGGCGCTCCCTGCGAACCAGGGGTATTCCACCAGATTTTGAAGGTCTTGACGGAGATTCCGTCGCCCCCACCGCTCCCTCCAAAGAAGATCCGCCTTCCGTCGTAAGTTTGGGTCCCCTTTCCATGGCCAATGCTCGTGAAAGTGCTCACTCTGATAGTTCCTTCATTGAATCGCTAATGGGTATGGCCCAAGATGGCAATGTTCCAAAAGGGGATGTGGGGGGCTCCCTTGAATTGAAATCTCTGTCTTTGGATCCCGAGAATATTGCGCGGGTTGTTTCTGGAAGGATAACCAATGTCAGTTTTTTCCCTTCAAGTAGTGTCAACATGATTGCCGCGGGTAACAAGTTTGGGAATATTGGGTTTTGGAATATGGGAGAAAGTGAGGTTCATTTATACCGTCCTCATAATGCTCCCATTTCTGGGATTTTGATTCAACCGCATTGTTGTTCCAAGATATACACAAGTTGTTATGATGGAGTTCTTCGGCTAATGGATGCTGAGAAGGAAATCTTTGATCTGGTGTTTGAGAGTGATGAAAAAATATATGCTCTTTCTCAACCACCGAATGACACAAACTGCCTATATCTTGCTGAGGGTTCTGGAGGTTTGACTATTTGGGATAACAGGGTGGGAAAACGTTCGTCGCACTGGGATTTGCATGACAGTAGGATTAACACCATAGATTTCAACTGTCAAAACCCTCACATTGTAGCTACTAGTTCCTCTGATGCAACTGCCTGCACCTGGGATTTGAGATATACTAATAGGAAGGATCTCACAGCCTTGAGGACATTTACCCACAAAAGATCTGTCCAATCTGCTTACTTCTCTCCTTCTGGAAGTAGCCTTGCAACTACAAGCTTGGACAACACTATTGGTATTCACAGTGGAGTTAACTTGGAGGATACGGCTCTTATTTCTCATTTTAATCAGACTGGCAGATGGCTTTCTACATTCAGAGCGAAATGGGGTTGGGATGACAAATATCTCTTCATTGGAAATATGAATAGAGGGGTTGATGTGGTCTCAGCAGTTCAAAGGAAAATAGTTATGACGTTAGAGAGCCCACACATGTCTGCCATTCCTTGCAGATTCGATATAAACTGTTACGAGGTTGGGATGCTTGTAGGAGCTACAAGTGGAGGGCAGCTTTATGTATGGACATCACGCTAG 1368 0.4525 MKLTDYELKRLENIRRNDEMMAALKLHSRATQLSNFKRQRVEAKSTRVKLEKKPKTETPIVIRVRRSLRTRGIPPDFEGLDGDSVAPTAPSKEDPPSVVSLGPLSMANARESAHSDSSFIESLMGMAQDGNVPKGDVGGSLELKSLSLDPENIARVVSGRITNVSFFPSSSVNMIAAGNKFGNIGFWNMGESEVHLYRPHNAPISGILIQPHCCSKIYTSCYDGVLRLMDAEKEIFDLVFESDEKIYALSQPPNDTNCLYLAEGSGGLTIWDNRVGKRSSHWDLHDSRINTIDFNCQNPHIVATSSSDATACTWDLRYTNRKDLTALRTFTHKRSVQSAYFSPSGSSLATTSLDNTIGIHSGVNLEDTALISHFNQTGRWLSTFRAKWGWDDKYLFIGNMNRGVDVVSAVQRKIVMTLESPHMSAIPCRFDINCYEVGMLVGATSGGQLYVWTSR 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05028 455 SMART WD40_4 190 230 IPR001680 GO:0005515
Viun3g05028 455 SMART WD40_4 323 361 IPR001680 GO:0005515
Viun3g05028 455 SMART WD40_4 147 188 IPR001680 GO:0005515
Viun3g05028 455 SMART WD40_4 275 315 IPR001680 GO:0005515
Viun3g05028 455 MobiDBLite consensus disorder prediction 72 100 - -
Viun3g05028 455 Coils Coil 33 53 - -
Viun3g05028 455 ProSitePatterns Trp-Asp (WD) repeats signature. 302 316 IPR019775 -
Viun3g05028 455 Gene3D - 152 455 IPR015943 GO:0005515
Viun3g05028 455 FunFam WD repeat-containing protein 76 152 454 - -
Viun3g05028 455 PANTHER UNCHARACTERIZED 1 454 - -
Viun3g05028 455 SUPERFAMILY WD40 repeat-like 136 452 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05028 Viun-Chr3 57076281 57084801 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05028 158 406 U-box Gene Family AT1G04510 22.814 6.13e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05028 K24755 - gmx:100800122 743.806