Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05023 ATGACCCCACAAATATTACTTCACAACTTATCTCATTGTTTCATCATGATGGAAATGATTGCACTTTTGATATTTGATGAATGTCATCATGCTCAAGTCAAAAGCAACCATGCTTATGCAGTAATCATGAAAATGTTCTACAAAAGTAATTCCTCAAAGGTTCCTCGTATATTTGGCATGACCGCATCCCCTGTTGTTGGAAAAGGAGCTTCTAGTGAAGCAAATTTGGCAAGAAGCATCAACAGTCTTGAACATATGCTTGATGCTAAGGTTTACTCTGTTGAAGACAAGGAATTGAAATCATATGTGACCACTCCTGTGATTAATATATATCGTTATGCTTCAACTGCAAGTGGGGAAACTAGCATGTACTTAATTGAAGAGATTAAACGCCAGTGCATAGCAACCCTTGGTAGGAGTTCAGAAGATCACCAGAAACGGATGAATACAAAGAAACTTCTGAACCGAATGCATGATAATGTGGTTTTCTGTTTACAGAATCTTGGCATTTGGGGAGCACTGCAAGCTAGTCATATGCTTCTGAGTGGTGATCGTTCTGAGAGGCATGAATTAGTGGAGGCAGAAGGAAATTCAAGTGATGACTCTGTGTGTGACACTTATCTTGCTCAGGCTGCCGAACTATTTACTTTACAGTGCATTAGAGGTGACAATGTATCTGATGATTTATCTTCTTCAGAAATATTGAAAGAGCCATTTTTCTCAGCTAAGCTCTTGCGACTCTTTGGGATACTTTCCACCTTTAGGTTGCAAAAGAACATGAAATGTATTATTTTTGTGAATCGAATTGTGATTGCGAGATCCCTGTCATACATACTTCAGAAGCTCAAGCTTCTAAGACAATGGAGGAGTGATTATCTAGTAGGAGTACATTCTGGGCTGAAGAGTATGTCCCGAAGAACCATGAACATGATTCTTGACAAGTTTCGCTCTGGAGAGTTGAATTTATTGGTTGCAACCAAAGTTGGTGAAGAAGGACTTGACATTCAGACATGTTGCCTCGTCATACGGTTTGATCTTCCAGAAACTGTTGCCAGCTTTATACAGTCAAGAGGCCGTGCACGCATGCCTCAGTCTGAATATGCTTTTTTGGTGGACAGTGGTAATAAGAAGGAGCTTGACATAATTGATGGTTTTGAGAAAGATGAACACCGAATGAATATGGAAGTTACTTTTCGAACATCTGATGAGACACACATCATCCCTGAGGAAAGAATTTTCAGAGTTGAGTCGACTGGTGCTTCTGTTAGTTCTGGATATAGTATCTCATTGCTTCACCAGTATTGTTCAAAGCTTCCACATGATGAGTATTTTGACCCCAAGCCAAATTTTTATTTCTTAGATGATTCAGAGGGAATTGTTTGCCACATAAGATTGCCTTCCAATGCACCAATACACCAAATTTTGGGTGCGCCACAGTTGTCTATGGAGGCTTCCAAACGAGATGCTTGCCTGACAGCAATAGAAGAACTGTATAAATTAGGCGCTTTAAGTGATTGTCTCTTGCCAAAGGAAGATGATGCAGAACCAGAAGAACAGGTTTCTGGCTCTACTGATGAAGATGAATGTGAAGATGCCATCTCAAGAGGAGAATTACATGAGATGCTAGTTCCTTCTGCCTTTGGTCAGTCATGGACTAACGAGGATGAAATCACCCATCTCAACTCGTACTACATAAAATTTAGTCCATGTCCAGAGGATAGGGTCTACAAAGAGTTTGGTCTTTTCATCATGGCCCCTCTTCCAATGGAGGCTGAGAAATTAGAACTTGATCTCCATCTTGCTCATGGACGATCTGTGATGACAAAATTTGTCCCATTTGGAGTTGTAGAATTTGACAAAGACGAGATTAAGATGGCAGAGAAATTTCAAGAAATGTTCCTCAAAATTATTCTGGATAGATTAGAATTTGTTTCCGATACTGTAGACTTGGGTATGGCTGCTGAAGCTCAGACAAGCTCGTTGACCTTCTACCTTTTGCTTCCAGTCGTATTGCAAGAATATGGAAATGCCATGAAAGTAGATTGGAAGACAGTGAAAAGATGCCTTTGGTCACCAATCTTCAGGCATCCAAAATATACTATGGACAAAAGAAAAAGCTCTTTTGATATTCACCTGAAACTTGCCAATGGTTACAGAAGTGTAAGAGATGTGGAGAATGGTTTAGTGTATGCCCCACATAAAAAGACATTTTATTTTGTCACAAATATTGATTATGAAAAGACTGGATTTAGTCTTCATAAAGAATCAGGCACTTCAAGCTACGTGGATGACTTAATTGAAAAGTTTTCCATTCATCTCAAATACCCAGAACAACCGCTTCTGCGTGTAAAACCACTCCCCAATTTGCACAACCTGCTACACAACCGAAAGCGTGAGGATGCAGAACCACAGGAGCTGGATGAATATTTAATTTATTTACCTCCTGAGCTATGTGAACTGAAAATAATGGGCTTTTCGAAGGATATTGGCAGTTCCATATCTTTGCTACCTTCAATTATGCATCGACTTGGAAACTTGCTGGTGGCTATTGAACTAAAGCAATTGCTATCTTTTTCTTTTCCCGAGGCAGCCGAAGTTAGTGCCCTTAGAATTTTAGAGGCTCTCACCACTGAGAAGTGTCAGGAGCGCTTTTCCCTTGAAAGACTTGAAGTACTTGGTGATGCTTTCCTTAAATTTGTTGTTGCACGCCATTTTTTTCTCATGCATGACAGCCTTCATGAAGGAGACCTAACAAAAAGGCGTTCCAATGCTGTAAATAATTCCAATTTGTTGAAGTTGGCCATTAGGCGCAATTTGCAGATCTATATATGCGATCAGACATTTGATCCCTCTCAATTCTATGCATTAGGCCGTCCTTGCCCGAGAATTTGTTGTAAAGAAACTGAAGAAAGCATACACTTTTGTGCAAATTCTGTTAAGGAGCAAGGAAAAGTAACTGAAACCAGATGTAACAAAAATCATCATTGGCTACATAAGAAAACAGTTGCTGATGTGGTGGAAGCTCTGGTTGGAGCATTCCTAGTTGACAGTGGCTTTAAAGCCGCAATTGCCTTTCTTACTTGGATTGGCATACGAGTTGATTTTGAAGCTTCACAAGTTCTTGATATTTGCATGGCAAGTGCTGGCTATTTACCTCTTTCTTCTGATGTGGACATTCCTTCTCTTGAAAGTAAGCTAGGACATCAATTTTTTCATAAGGGTCTGCTTCTCCAGGCATTTGTGCACCCTTCTTACAATAAGCTTGGAGGAGGCTGTTATCAGCGATTGGAGTTTCTTGGAGATGCTGTCCTGGATTATTTGATTGCTTCATATCTATTCTCAGCTTATCCCAAACTAAAGCCTGGTCAATTGACAGATTTGAGATCATTATCTGTTAACAACAAGGCATTTGCCTGTGTAACAGTAGATCGCAGTTTTGATAAATATCTTTTATGTGATTCAAATGGCTTGTCTGAGGCGATAAAAAAGTATGTAGACTACGTTCGAGGTCCTACAACAGAGAGTGGCATTAAAGAAGGCCCAAAATGTCCCAAGGCACTGGGTGACTTAGTGGAATCTTGTGTTGGTGCCATCCTTCTAGATACTGGGTTCAATTTGAACAAAGTTTGGGAAATTATGACTTCGTTCTTGGACCCAATCATGAAATTCTCATCAAGCTTGCAGCTGAGTCCTATTAGGGATTTGCGAGAACTTTGCCAAGCTCATAATTTGGAGTTGGAGTTTCTGTCAGTGCCATTAAAACTGACTAAAATGTTTTTAGTTGAAGCCAAAGCGAGTGGGAACAATGTATGTGAAACAGCTTCCGCAACTGGCCAAAATAAAAAGGAGGCTTGTAGAATTGCTTCACTTATGCTTTTTTCAAAGTTCAAGGCTCAAGGCTGGAAAGCAAAGTCAAAAACTTTGGAAGAAGTTCTGGAATCAACTTCTAAAATGGAACCAAAACTTATTGGCTATGATGAAACTCCCATTGATGTAACAGATACCAGTATTGCCAAGAATATAATGGTAACTGCAGACTTGTACAGCAAATCAAACCCAGAAATTCGACCTATCCAAGATACAGATGAAATATGCTCTCCATGTGTGAAACCTATTGGCCAACTGCTTCAATCTTCCGCGAGGGAAAAACCCAGTGAAATATTTGAAAATCATTGCAGCAGTGAATCATCAGGGACAGGAACCGCAAGATCACGACTGTATGAATTGTGTGCTGCTTATTGCTGGAAACCTCCTTCATTTGAATGCTGCAAAGAAGAGGGACCAGATCACCTCAAACAATTCACTTACAAGATGACCTTGGAGATAGAAGAGGCCCCTGATACTATTTTAGAGTTTGTTGGCGAACCTCGGACGAAAAAGAAAGATGCTGCAGAGAGTGCGGCTGAGGGTGCATTTTGGTACCTGCAACAGGTAGGCTACTTTTGCTAG 4449 0.4021 MTPQILLHNLSHCFIMMEMIALLIFDECHHAQVKSNHAYAVIMKMFYKSNSSKVPRIFGMTASPVVGKGASSEANLARSINSLEHMLDAKVYSVEDKELKSYVTTPVINIYRYASTASGETSMYLIEEIKRQCIATLGRSSEDHQKRMNTKKLLNRMHDNVVFCLQNLGIWGALQASHMLLSGDRSERHELVEAEGNSSDDSVCDTYLAQAAELFTLQCIRGDNVSDDLSSSEILKEPFFSAKLLRLFGILSTFRLQKNMKCIIFVNRIVIARSLSYILQKLKLLRQWRSDYLVGVHSGLKSMSRRTMNMILDKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNKKELDIIDGFEKDEHRMNMEVTFRTSDETHIIPEERIFRVESTGASVSSGYSISLLHQYCSKLPHDEYFDPKPNFYFLDDSEGIVCHIRLPSNAPIHQILGAPQLSMEASKRDACLTAIEELYKLGALSDCLLPKEDDAEPEEQVSGSTDEDECEDAISRGELHEMLVPSAFGQSWTNEDEITHLNSYYIKFSPCPEDRVYKEFGLFIMAPLPMEAEKLELDLHLAHGRSVMTKFVPFGVVEFDKDEIKMAEKFQEMFLKIILDRLEFVSDTVDLGMAAEAQTSSLTFYLLLPVVLQEYGNAMKVDWKTVKRCLWSPIFRHPKYTMDKRKSSFDIHLKLANGYRSVRDVENGLVYAPHKKTFYFVTNIDYEKTGFSLHKESGTSSYVDDLIEKFSIHLKYPEQPLLRVKPLPNLHNLLHNRKREDAEPQELDEYLIYLPPELCELKIMGFSKDIGSSISLLPSIMHRLGNLLVAIELKQLLSFSFPEAAEVSALRILEALTTEKCQERFSLERLEVLGDAFLKFVVARHFFLMHDSLHEGDLTKRRSNAVNNSNLLKLAIRRNLQIYICDQTFDPSQFYALGRPCPRICCKETEESIHFCANSVKEQGKVTETRCNKNHHWLHKKTVADVVEALVGAFLVDSGFKAAIAFLTWIGIRVDFEASQVLDICMASAGYLPLSSDVDIPSLESKLGHQFFHKGLLLQAFVHPSYNKLGGGCYQRLEFLGDAVLDYLIASYLFSAYPKLKPGQLTDLRSLSVNNKAFACVTVDRSFDKYLLCDSNGLSEAIKKYVDYVRGPTTESGIKEGPKCPKALGDLVESCVGAILLDTGFNLNKVWEIMTSFLDPIMKFSSSLQLSPIRDLRELCQAHNLELEFLSVPLKLTKMFLVEAKASGNNVCETASATGQNKKEACRIASLMLFSKFKAQGWKAKSKTLEEVLESTSKMEPKLIGYDETPIDVTDTSIAKNIMVTADLYSKSNPEIRPIQDTDEICSPCVKPIGQLLQSSAREKPSEIFENHCSSESSGTGTARSRLYELCAAYCWKPPSFECCKEEGPDHLKQFTYKMTLEIEEAPDTILEFVGEPRTKKKDAAESAAEGAFWYLQQVGYFC 1482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05023 1482 SUPERFAMILY RNase III domain-like 871 1031 IPR036389 GO:0004525|GO:0006396
Viun3g05023 1482 ProSiteProfiles Ribonuclease III family domain profile. 849 1018 IPR000999 GO:0004525|GO:0006396
Viun3g05023 1482 CDD RIBOc 871 1036 IPR000999 GO:0004525|GO:0006396
Viun3g05023 1482 SUPERFAMILY dsRNA-binding domain-like 1185 1296 - -
Viun3g05023 1482 Gene3D - 1 133 IPR027417 -
Viun3g05023 1482 Gene3D Ribonuclease III domain 1057 1230 IPR036389 GO:0004525|GO:0006396
Viun3g05023 1482 SUPERFAMILY RNase III domain-like 1058 1222 IPR036389 GO:0004525|GO:0006396
Viun3g05023 1482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 377 IPR027417 -
Viun3g05023 1482 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1230 1298 IPR014720 -
Viun3g05023 1482 CDD DSRM_EIF2AK2-like 1229 1296 - -
Viun3g05023 1482 SMART PAZ_2_a_3 698 848 IPR003100 GO:0005515
Viun3g05023 1482 SMART riboneu5 871 1038 IPR000999 GO:0004525|GO:0006396
Viun3g05023 1482 SMART riboneu5 1074 1226 IPR000999 GO:0004525|GO:0006396
Viun3g05023 1482 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 243 404 IPR001650 -
Viun3g05023 1482 FunFam Endoribonuclease dicer-like 1 1053 1224 - -
Viun3g05023 1482 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 427 517 IPR005034 GO:0016891
Viun3g05023 1482 Pfam Dicer dimerisation domain 427 511 - -
Viun3g05023 1482 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1401 1477 IPR014720 -
Viun3g05023 1482 CDD DSRM_DCL_plant 1408 1477 - -
Viun3g05023 1482 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 82 IPR014001 -
Viun3g05023 1482 Gene3D - 1408 1477 - -
Viun3g05023 1482 ProSiteProfiles PAZ domain profile. 722 822 IPR003100 GO:0005515
Viun3g05023 1482 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1402 1476 - -
Viun3g05023 1482 Gene3D Dicer dimerisation domain 423 519 IPR038248 -
Viun3g05023 1482 Gene3D Ribonuclease III domain 852 1029 IPR036389 GO:0004525|GO:0006396
Viun3g05023 1482 PANTHER DICER-RELATED 1 1301 - -
Viun3g05023 1482 FunFam Endoribonuclease dicer-like 1 234 397 - -
Viun3g05023 1482 SUPERFAMILY PAZ domain 722 820 IPR036085 GO:0005515
Viun3g05023 1482 Pfam Ribonuclease III domain 887 1018 IPR000999 GO:0004525|GO:0006396
Viun3g05023 1482 Pfam Ribonuclease III domain 1094 1203 IPR000999 GO:0004525|GO:0006396
Viun3g05023 1482 SMART DRBM_3 1231 1297 IPR014720 -
Viun3g05023 1482 SMART DRBM_3 1402 1476 IPR014720 -
Viun3g05023 1482 SUPERFAMILY dsRNA-binding domain-like 1401 1479 - -
Viun3g05023 1482 ProSitePatterns Ribonuclease III family signature. 1094 1102 IPR000999 GO:0004525|GO:0006396
Viun3g05023 1482 CDD RIBOc 1075 1225 IPR000999 GO:0004525|GO:0006396
Viun3g05023 1482 Gene3D paz domain 718 820 - -
Viun3g05023 1482 Gene3D - 236 397 IPR027417 -
Viun3g05023 1482 FunFam Endoribonuclease dicer-like 1 422 518 - -
Viun3g05023 1482 SMART helicmild6 273 363 IPR001650 -
Viun3g05023 1482 ProSiteProfiles Ribonuclease III family domain profile. 1059 1203 IPR000999 GO:0004525|GO:0006396
Viun3g05023 1482 Pfam PAZ domain 722 843 IPR003100 GO:0005515
Viun3g05023 1482 Pfam Helicase conserved C-terminal domain 255 361 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05023 Viun-Chr3 57043516 57062947 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05023 261 360 Eukaryotic Initiation Factors Gene Family AT1G72730 30.000 1.28e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05023 K11592 - gmx:100818702 2608.94