Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05022 ATGCCTGACGGAGAGTCCTCTGTGGCGGTCGGCGACCAATCCTCCATGGACCCTTCTTTAAGTCTCTCTGAGCAACAACTGTCCCTCAGTCTTTCCCAACTTAAACTTGACGATGACTCAGTCAAGAAAGATCCCCGGAAAATTGCAAGAAAGTATCAGTTGGAGTTGTGCAAAAAAGCTATGGAAGAAAATATAATTGTATATTTAGGGACAGGGTGTGGGAAGACTCACATTGCTGTGCTTCTTATGCATGAAATGGGCCATTTGATTCGGAAACCGCAGAAAAACATATGTGTCTTTCTTGCCCCTACTGTGGCTTTAGTTCAGCAGCAAGCAAAGGTTATAGCCGACTCTACTGATTTTAAGGTTCAAATTTTCTGTGGAGGTTCCAAGCGCTTGAAACGGCATCAAGACTGGGAGCAGGAGATTGGACAATATGAGGTTCTTGTTATGACCCCACAAATATTACTTCACAACTTATCTCATTGTTTCATCATGATGGAAATGATTGCACTTTTGATATTTGATGAATGTCATCATGCTCAAGTCAAAAGCAACCATGCTTATGCAGTAATCATGAAAATGTTCTACAAAAGTAATTCCTCAAAGGTTCCTCGTATATTTGGCATGACCGCATCCCCTGTTGTTGGAAAAGGAGCTTCTAGTGAAGCAAATTTGGCAAGAAGCATCAACAGTCTTGAACATATGCTTGATGCTAAGGTTTACTCTGTTGAAGACAAGGAATTGAAATCATATGTGACCACTCCTGTGATTAATATATATCGTTATGCTTCAACTGCAAGTGGGGAAACTAGCATGTACTTAATTGAAGAGATTAAACGCCAGTGCATAGCAACCCTTGGTAGGAGTTCAGAAGATCACCAGAAACGGATGAATACAAAGAAACTTCTGAACCGAATGCATGATAATGTGGTTTTCTGTTTACAGAATCTTGGCATTTGGGGAGCACTGCAAGCTAGTCATATGCTTCTGAGTGGTGATCGTTCTGAGAGGCATGAATTAGTGGAGGCAGAAGGAAATTCAAGTGATGACTCTGTGTGTGACACTTATCTTGCTCAGGCTGCCGAACTATTTACTTTACAGTGCATTAGAGGTGACAATGTATCTGATGATTTATCTTCTTCAGAAATATTGAAAGAGCCATTTTTCTCAGCTAAGCTCTTGCGACTCTTTGGGATACTTTCCACCTTTAGGTTGCAAAAGAACATGAAATGTATTATTTTTGTGAATCGAATTGTGATTGCGAGATCCCTGTCATACATACTTCAGAAGCTCAAGCTTCTAAGACAATGGAGGAGTGATTATCTAGTAGGAGTACATTCTGGGCTGAAGAGTATGTCCCGAAGAACCATGAACATGATTCTTGACAAGTTTCGCTCTGGAGAGTTGAATTTATTGGTTGCAACCAAAGTTGGTGAAGAAGGACTTGACATTCAGACATGTTGCCTCGTCATACGGTTTGATCTTCCAGAAACTGTTGCCAGCTTTATACAGTCAAGAGGCCGTGCACGCATGCCTCAGTCTGAATATGCTTTTTTGGTGGACAGTGGTAATAAGAAGGAGCTTGACATAATTGATGGTTTTGAGAAAGATGAACACCGAATGAATATGGAAGTTACTTTTCGAACATCTGATGAGACACACATCATCCCTGAGGAAAGAATTTTCAGAGTTGAGTCGACTGGTGCTTCTGTTAGTTCTGGATATAGTATCTCATTGCTTCACCAGTATTGTTCAAAGCTTCCACATGATGAGTATTTTGACCCCAAGCCAAATTTTTATTTCTTAGATGATTCAGAGGGAATTGTTTGCCACATAAGATTGCCTTCCAATGCACCAATACACCAAATTTTGGGTGCGCCACAGTTGTCTATGGAGGCTTCCAAACGAGATGCTTGCCTGACAGCAATAGAAGAACTGTATAAATTAGGCGCTTTAAGTGATTGTCTCTTGCCAAAGGAAGATGATGCAGAACCAGAAGAACAGGTTTCTGGCTCTACTGATGAAGATGAATGTGAAGATGCCATCTCAAGAGGAGAATTACATGAGATGCTAGTTCCTTCTGCCTTTGGTCAGTCATGGACTAACGAGGATGAAATCACCCATCTCAACTCGTACTACATAAAATTTAGTCCATGTCCAGAGGATAGGGTCTACAAAGAGTTTGGTCTTTTCATCATGGCCCCTCTTCCAATGGAGGCTGAGAAATTAGAACTTGATCTCCATCTTGCTCATGGACGATCTGTGATGACAAAATTTGTCCCATTTGGAGTTGTAGAATTTGACAAAGACGAGATTAAGATGGCAGAGAAATTTCAAGAAATGTTCCTCAAAATTATTCTGGATAGATTAGAATTTGTTTCCGATACTGTAGACTTGGGTATGGCTGCTGAAGCTCAGACAAGCTCGTTGACCTTCTACCTTTTGCTTCCAGTCGTATTGCAAGAATATGGAAATGCCATGAAAGTAGATTGGAAGACAGTGAAAAGATGCCTTTGGTCACCAATCTTCAGGCATCCAAAATATACTATGGACAAAAGAAAAAGCTCTTTTGATATTCACCTGAAACTTGCCAATGGTTACAGAAGTGTAAGAGATGTGGAGAATGGTTTAGTGTATGCCCCACATAAAAAGACATTTTATTTTGTCACAAATATTGATTATGAAAAGACTGGATTTAGTCTTCATAAAGAATCAGGCACTTCAAGCTACGTGGATGACTTAATTGAAAAGTTTTCCATTCATCTCAAATACCCAGAACAACCGCTTCTGCGTGTAAAACCACTCCCCAATTTGCACAACCTGCTACACAACCGAAAGCGTGAGGATGCAGAACCACAGGAGCTGGATGAATATTTAATTTATTTACCTCCTGAGCTATGTGAACTGAAAATAATGGGCTTTTCGAAGGATATTGGCAGTTCCATATCTTTGCTACCTTCAATTATGCATCGACTTGGAAACTTGCTGGTGGCTATTGAACTAAAGCAATTGCTATCTTTTTCTTTTCCCGAGGCAGCCGAAGTTAGTGCCCTTAGAATTTTAGAGGCTCTCACCACTGAGAAGTGTCAGGAGCGCTTTTCCCTTGAAAGACTTGAAGTACTTGGTGATGCTTTCCTTAAATTTGTTGTTGCACGCCATTTTTTTCTCATGCATGACAGCCTTCATGAAGGAGACCTAACAAAAAGGCGTTCCAATGCTGTAAATAATTCCAATTTGTTGAAGTTGGCCATTAGGCGCAATTTGCAGATCTATATATGCGATCAGACATTTGATCCCTCTCAATTCTATGCATTAGGCCGTCCTTGCCCGAGAATTTGTTGTAAAGAAACTGAAGAAAGCATACACTTTTGTGCAAATTCTGTTAAGGAGCAAGGAAAAGTAACTGAAACCAGATGTAACAAAAATCATCATTGGCTACATAAGAAAACAGTTGCTGATGTGGTGGAAGCTCTGGTTGGAGCATTCCTAGTTGACAGTGGCTTTAAAGCCGCAATTGCCTTTCTTACTTGGATTGGCATACGAGTTGATTTTGAAGCTTCACAAGTTCTTGATATTTGCATGGCAAGTGCTGGCTATTTACCTCTTTCTTCTGATGTGGACATTCCTTCTCTTGAAAGTAAGCTAGGACATCAATTTTTTCATAAGGGTCTGCTTCTCCAGGCATTTGTGCACCCTTCTTACAATAAGCTTGGAGGAGGCTGTTATCAGCGATTGGAGTTTCTTGGAGATGCTGTCCTGGATTATTTGATTGCTTCATATCTATTCTCAGCTTATCCCAAACTAAAGCCTGGTCAATTGACAGATTTGAGATCATTATCTGTTAACAACAAGGCATTTGCCTGTGTAACAGTAGATCGCAGTTTTGATAAATATCTTTTATGTGATTCAAATGGCTTGTCTGAGGCGATAAAAAAGTATGTAGACTACGTTCGAGGTCCTACAACAGAGAGTGGCATTAAAGAAGGCCCAAAATGTCCCAAGGCACTGGGTGACTTAGTGGAATCTTGTGTTGGTGCCATCCTTCTAGATACTGGGTTCAATTTGAACAAAGTTTGGGAAATTATGACTTCGTTCTTGGACCCAATCATGAAATTCTCATCAAGCTTGCAGCTGAGTCCTATTAGGGATTTGCGAGAACTTTGCCAAGCTCATAATTTGGAGTTGGAGTTTCTGTCAGTGCCATTAAAACTGACTAAAATGTTTTTAGTTGAAGCCAAAGCGAGTGGGAACAATGTATGTGAAACAGCTTCCGCAACTGGCCAAAATAAAAAGGAGGCTTGTAGAATTGCTTCACTTATGCTTTTTTCAAAGTTCAAGGCTCAAGGCTGGAAAGCAAAGTCAAAAACTTTGGAAGAAGTTCTGGAATCAACTTCTAAAATGGAACCAAAACTTATTGGCTATGATGAAACTCCCATTGATGTAACAGATACCAGTATTGCCAAGAATATAATGGTAACTGCAGACTTGTACAGCAAATCAAACCCAGAAATTCGACCTATCCAAGATACAGATGAAATATGCTCTCCATGTGTGAAACCTATTGGCCAACTGCTTCAATCTTCCGCGAGGGAAAAACCCAGTGAAATATTTGAAAATCATTGCAGCAGTGAATCATCAGGGACAGGAACCGCAAGATCACGACTGTATGAATTGTGTGCTGCTTATTGCTGGAAACCTCCTTCATTTGAATGCTGCAAAGAAGAGGGACCAGATCACCTCAAACAATTCACTTACAAGATGACCTTGGAGATAGAAGAGGCCCCTGATACTATTTTAGAGTTTGTTGGCGAACCTCGGACGAAAAAGAAAGATGCTGCAGAGAGTGCGGCTGAGGGTGCATTTTGGTACCTGCAACAGGTAGGCTACTTTTGCTAG 4899 0.406 MPDGESSVAVGDQSSMDPSLSLSEQQLSLSLSQLKLDDDSVKKDPRKIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLMHEMGHLIRKPQKNICVFLAPTVALVQQQAKVIADSTDFKVQIFCGGSKRLKRHQDWEQEIGQYEVLVMTPQILLHNLSHCFIMMEMIALLIFDECHHAQVKSNHAYAVIMKMFYKSNSSKVPRIFGMTASPVVGKGASSEANLARSINSLEHMLDAKVYSVEDKELKSYVTTPVINIYRYASTASGETSMYLIEEIKRQCIATLGRSSEDHQKRMNTKKLLNRMHDNVVFCLQNLGIWGALQASHMLLSGDRSERHELVEAEGNSSDDSVCDTYLAQAAELFTLQCIRGDNVSDDLSSSEILKEPFFSAKLLRLFGILSTFRLQKNMKCIIFVNRIVIARSLSYILQKLKLLRQWRSDYLVGVHSGLKSMSRRTMNMILDKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNKKELDIIDGFEKDEHRMNMEVTFRTSDETHIIPEERIFRVESTGASVSSGYSISLLHQYCSKLPHDEYFDPKPNFYFLDDSEGIVCHIRLPSNAPIHQILGAPQLSMEASKRDACLTAIEELYKLGALSDCLLPKEDDAEPEEQVSGSTDEDECEDAISRGELHEMLVPSAFGQSWTNEDEITHLNSYYIKFSPCPEDRVYKEFGLFIMAPLPMEAEKLELDLHLAHGRSVMTKFVPFGVVEFDKDEIKMAEKFQEMFLKIILDRLEFVSDTVDLGMAAEAQTSSLTFYLLLPVVLQEYGNAMKVDWKTVKRCLWSPIFRHPKYTMDKRKSSFDIHLKLANGYRSVRDVENGLVYAPHKKTFYFVTNIDYEKTGFSLHKESGTSSYVDDLIEKFSIHLKYPEQPLLRVKPLPNLHNLLHNRKREDAEPQELDEYLIYLPPELCELKIMGFSKDIGSSISLLPSIMHRLGNLLVAIELKQLLSFSFPEAAEVSALRILEALTTEKCQERFSLERLEVLGDAFLKFVVARHFFLMHDSLHEGDLTKRRSNAVNNSNLLKLAIRRNLQIYICDQTFDPSQFYALGRPCPRICCKETEESIHFCANSVKEQGKVTETRCNKNHHWLHKKTVADVVEALVGAFLVDSGFKAAIAFLTWIGIRVDFEASQVLDICMASAGYLPLSSDVDIPSLESKLGHQFFHKGLLLQAFVHPSYNKLGGGCYQRLEFLGDAVLDYLIASYLFSAYPKLKPGQLTDLRSLSVNNKAFACVTVDRSFDKYLLCDSNGLSEAIKKYVDYVRGPTTESGIKEGPKCPKALGDLVESCVGAILLDTGFNLNKVWEIMTSFLDPIMKFSSSLQLSPIRDLRELCQAHNLELEFLSVPLKLTKMFLVEAKASGNNVCETASATGQNKKEACRIASLMLFSKFKAQGWKAKSKTLEEVLESTSKMEPKLIGYDETPIDVTDTSIAKNIMVTADLYSKSNPEIRPIQDTDEICSPCVKPIGQLLQSSAREKPSEIFENHCSSESSGTGTARSRLYELCAAYCWKPPSFECCKEEGPDHLKQFTYKMTLEIEEAPDTILEFVGEPRTKKKDAAESAAEGAFWYLQQVGYFC 1632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05022 1632 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 393 554 IPR001650 -
Viun3g05022 1632 ProSiteProfiles Ribonuclease III family domain profile. 1209 1353 IPR000999 GO:0004525|GO:0006396
Viun3g05022 1632 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 577 667 IPR005034 GO:0016891
Viun3g05022 1632 SUPERFAMILY RNase III domain-like 1021 1181 IPR036389 GO:0004525|GO:0006396
Viun3g05022 1632 CDD RIBOc 1225 1375 IPR000999 GO:0004525|GO:0006396
Viun3g05022 1632 SMART ultradead3 45 250 IPR014001 -
Viun3g05022 1632 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1551 1627 IPR014720 -
Viun3g05022 1632 Gene3D - 1558 1627 - -
Viun3g05022 1632 SUPERFAMILY dsRNA-binding domain-like 1335 1446 - -
Viun3g05022 1632 Gene3D Ribonuclease III domain 1207 1380 IPR036389 GO:0004525|GO:0006396
Viun3g05022 1632 FunFam Endoribonuclease dicer-like 1 572 668 - -
Viun3g05022 1632 Gene3D Ribonuclease III domain 1002 1179 IPR036389 GO:0004525|GO:0006396
Viun3g05022 1632 FunFam Endoribonuclease dicer-like 1 1203 1374 - -
Viun3g05022 1632 ProSiteProfiles PAZ domain profile. 872 972 IPR003100 GO:0005515
Viun3g05022 1632 SMART PAZ_2_a_3 848 998 IPR003100 GO:0005515
Viun3g05022 1632 SMART helicmild6 423 513 IPR001650 -
Viun3g05022 1632 CDD DSRM_EIF2AK2-like 1379 1446 - -
Viun3g05022 1632 Gene3D - 47 283 IPR027417 -
Viun3g05022 1632 MobiDBLite consensus disorder prediction 8 23 - -
Viun3g05022 1632 SUPERFAMILY RNase III domain-like 1208 1372 IPR036389 GO:0004525|GO:0006396
Viun3g05022 1632 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 232 IPR014001 -
Viun3g05022 1632 SUPERFAMILY dsRNA-binding domain-like 1551 1629 - -
Viun3g05022 1632 MobiDBLite consensus disorder prediction 1 23 - -
Viun3g05022 1632 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1380 1448 IPR014720 -
Viun3g05022 1632 Gene3D Dicer dimerisation domain 573 669 IPR038248 -
Viun3g05022 1632 SMART DRBM_3 1552 1626 IPR014720 -
Viun3g05022 1632 SMART DRBM_3 1381 1447 IPR014720 -
Viun3g05022 1632 ProSitePatterns Ribonuclease III family signature. 1244 1252 IPR000999 GO:0004525|GO:0006396
Viun3g05022 1632 CDD RIBOc 1021 1186 IPR000999 GO:0004525|GO:0006396
Viun3g05022 1632 Pfam PAZ domain 872 993 IPR003100 GO:0005515
Viun3g05022 1632 SUPERFAMILY PAZ domain 872 970 IPR036085 GO:0005515
Viun3g05022 1632 SMART riboneu5 1224 1376 IPR000999 GO:0004525|GO:0006396
Viun3g05022 1632 SMART riboneu5 1021 1188 IPR000999 GO:0004525|GO:0006396
Viun3g05022 1632 FunFam Endoribonuclease dicer-like 1 384 547 - -
Viun3g05022 1632 Pfam DEAD/DEAH box helicase 51 212 IPR011545 GO:0003676|GO:0005524
Viun3g05022 1632 ProSiteProfiles Ribonuclease III family domain profile. 999 1168 IPR000999 GO:0004525|GO:0006396
Viun3g05022 1632 FunFam Endoribonuclease dicer-like protein 44 284 - -
Viun3g05022 1632 Gene3D - 386 547 IPR027417 -
Viun3g05022 1632 Gene3D paz domain 868 970 - -
Viun3g05022 1632 CDD DSRM_DCL_plant 1558 1627 - -
Viun3g05022 1632 Pfam Ribonuclease III domain 1244 1353 IPR000999 GO:0004525|GO:0006396
Viun3g05022 1632 Pfam Ribonuclease III domain 1037 1168 IPR000999 GO:0004525|GO:0006396
Viun3g05022 1632 Pfam Helicase conserved C-terminal domain 406 511 IPR001650 -
Viun3g05022 1632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 527 IPR027417 -
Viun3g05022 1632 Pfam Dicer dimerisation domain 577 661 - -
Viun3g05022 1632 CDD DEXHc_dicer 47 246 - -
Viun3g05022 1632 PANTHER DICER-RELATED 62 1447 - -
Viun3g05022 1632 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1552 1626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05022 Viun-Chr3 57043208 57062947 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05022 411 510 Eukaryotic Initiation Factors Gene Family AT1G72730 30.000 1.40e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05022 K11592 - gmx:100818702 2839.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05022 3 57043208 57062947 Viun3g05022 3 57043208 57062947 ECH