Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05005 ATGGCGTTTGATCAGAATTCGGTTCCATTGGATCTTCGTCCGTTGAATGTGGCCGCCGCGATGGCGGAGGAGCCGATGATTTCGCCGGCCACCCTCACGCCGCCGACTCCGAATTCTGTGGGCGAGCTTTTTTACCAGCCGGCGTCCTCCGCCGGCACAACGTGGTGCGTCCGCCCCATTACGCATGCCAACGTGAGCCCTGCCGCGGCGTATGGGTTTAACTACGGCGCTTCCAGCTTTGGCAGTCGCGTCTTTGCCGGGAATGCTTTGAGTTTGGGGAAGCTTGTGGGGTGTAATGGATTGGAGAAGGCCTGCAATGATACAAGTGGTTTTAGTTATGGTGCTGGCGGGGTTCGGGGAGGCAGAGTGGTCGGTAGTGGAGGCGATCAGGGTTGCGGGGATGAGGGTGGTGGCGGCGGTGATGATTCGGTGTCCGGGAAGAAGGTGAAGTTTCTCTGCAGTTTTGGTGGGAAGATTTTGCCTAGGCCTAGTGATGGAATGTTGAGATATGTTGGGGGCCAAACAAGGATCATCAGTGTTAGGAAGGATGTGAGTTTCAATGATTTGGTGCAGAAGATGGTTGACACTTATGGGCAGGCTGTGGTTATCAAGTATCAGCTTCCTGAGGAGGATCTTGATTCCTTGGTGTCCGTGTCATGTCACGATGATGTTGAGAATATGATGGAAGAGTATGATAAGTTGGTTGAGAAATCTTCCGACGGTTCTGCAAAACTAAGAGTTTTTCTGTTTTCTGTTTCGGAGACGGAAGTTTCTAGTGGGATGCAGTTGGGGGACTTGCAGGATACCGGGCAGAAATATTTTGATGCTGTGAATGGGATTGGTATGACAGATGCGATTGGGTTTGGCGGTGGGATGAATATGAAGGGGAGTGTTGCAAGTGCTGCTTCAACCCAGAATTCGGATTTGAGCGGGGCTGAGACTTTTGATAGTTCAATTACTGGTCAAGGGGATGTCACTGGGGTGCCCTTGTCATCACCTAAGGATAATGTGATAGCAGCTTCCTCAGACACAAGTGCTAATATGGTGAGTTCAGAGGCCAGTGCACCGGTTTACTCGGGTGTTGCGGTTTCGATACCCATGCCTGTGGGTAGTAGGGCTAGTCCAACCCCATCCCACAGCCCTTATTTTCAGAATGAGGTTGAGTTAGAAAGGTCTGTTCCTGTTGCTTTGGCCCAGCAGCCTTTTGGATTGCAGCAAGCTGGAATAGAAGTTTCATCCCCTTCACCTTATTATCAGACTTGTGTTGATCCTAGCCAGGAGGTTATGAACCATGCGGACTATGTGCAGGTTACTTCACAGATGAGGTTCACAAACCCTCAGCTTGTAGGAAAGACCGGGACTGTCTTGAGGCAACAGCAGTTTCATGATAATACTCCCGGCTTAGCATTGCATCATCAGGTCATCCCTGGGGTACAAATGGCTGTGGCTCCACAATCTTCTCACGCTGGTGTGAGACAGAATGTTATTCAACCACAAACCTTGGTGCAATCACAGCAGCATCTTTTGGATCAATACCACGATGAAAATACATCAGGGGTAAGGATTATCCAGCTTCCTGCTGAACCTAGCTACAACACTTACCAGGTTCCAGCGAGTCAAGTATCACCTGTCATAGTTGGAGGCAATTATGGCTGGGTTCAGGTTCCTTCACAAGAGCGCGTTGTTATCCCGGATGGAGTATCACCCCAACAACAGGCAACGAGTCATGAGAAATTCCGAAGAATCGAGGACTGTTCTATGTGTCAAACAAAACTACCTCATGCACATTCTGATCCAGTAGTTCCGGATGAGCGTGGTGGTGGTGCAGGTCCTGTTCCTGATTCAACCCCAAGTCACTATAGCTTCCCAATGGAGGAGAACATAAAAGCTCAAGCATCAAATAGGCTTATGCCAGTGGCGATGGCGCCCTTGAAGGAAGGCAATGCTGAACAAGGGGCTGGGATCAGACCCAGGGTCGTTGGCAAACTGGAACCTCCTGATGGAGTGCATCATACTGAGACCACTGGGCTTTCTCATAATATTGAGCCACAGCCGGAAGAATTTAATCACACCGGGAATTCATTTTTCCAGGAAAAAAATGCATTGAAAGGTAGAAAACAATCTCCAAATGATGAGCTCATGGGAACAGCAACACTGTCTTATTTAGATGATGTTGGCCACCAACACATGGTACCAGTTGAAAACTGGGTTAAAGATGTGCTTATTAACAAACCTATGAATAATGATTTGTCTATGGTCGATAGAACATCTTTGCGAACTTCAGAGTGTATGGTTCAAGGATCTCCAAATGAATATACTAATGAACGTACTGGGGTTGTTTCTAAATCAGATGAGATACATAATTGGATTAGACAAGACCATCTAAAACCAATTGATGGAAGGATGGACACCTTCAAGATACACAATTCTGATGCTTATGTAAGTAATGACTACTCTTTTCTGCCAGCTGATAAACCCAGTGGGAATGATAATTTAGGTTACAGCACTCATAAATCTATAGAGGAAGAGGTGATTCTGGATAACTTTGGCAGGTCAAAGTTGATAGTTGATGCAAATCAAAATAATATTGCAGCTGTGCTGCCTTGTTCTTCTTCATACAGGCAAAATTCCAGGTCAGGGGAACACAATGAGGCTACACAACCCCCTATTTGGGGCATTCCCGGCTCAAATCCTCAATCGAATATTGGAAACCCCCACACCGAAGATGCAGCACTATCTTCATCATCTCCATCCGTCAGGTTTGGAGATGTGCAGGATACTCCGAACTCACTGTTCAGCAATCAGGATCCATGGAATATACAGCATGGTACCTTCTTTCCACCTGCTAGACAAAGCAAAACTGCATTGAAGAAAGAAACCTTTTCTTGCCAGGATCCCTTTGCTGAGGATCCTGGTAGCTTTGGGGAACAAAGTTTAGAAGCACAGTTGGATGATAGCCTCTATCAGTCATTCAAACAAAATTTAACCTTAGAACATGGTCGCTCAGCCAAAGGTTCAGCAGAAGACCAACAACTCCAAGCTGTTGCGGAAAATGTAGCTGCCTCTGTTTTGCACTCAAGAAATCCTTCAAATTCTGACTTGCATTCCAGAGATGTTTCCTGCTGTGATAACATTGAGGATGCCAGTGTTCAAAATAATCTTATGGATGTAAACTGTGGACATACAACTCAGGAGGTCTGGAGCAGGCAACTAGAAAAAACAAATTGTGGCTTTACAGCATCAGGTTTTGGAAAATTACAGGTTATAAAGAACTGTGATCTTGAAGAACAGACAGAACTGGGTTCTGGTACGTTTGGTACCGTATATCATGGAAAATGGAGGGGCACTGATGTTGCAATCAAGCGCATTACTGAAAGATGTTTTGCTGGAAAGCCTTCAGAGCAAGAACGCATGAGAAATGACTTCTGGAATGAGGCAATCAAGCTTGCTGACTTGCACCATCCAAATGTGGTAGCTTTCTACGGTGTTGTGCTTGATGGCCCTGGTGGTTCTGTGGCAACGGTTACTGAATATATGGTTAATGGTTCCTTAAGGAATGCCTTGCAGAAGAGTGACAGGAATCTTGAAAAGCGCAAGCGACTTTTGATTGCAATGGACGTGGCCTTTGGCATGGAGTACCTACATGGAAAAAACATAGTACACTTTGACTTGAAAAGTGACAACTTGCTTGTTAATCTCCGAGATCCACACCGACCAATATGCAAGGTTGGAGACTTGGGTCTGTCGAAAGTAAAATGTCAGACACTGATCTCTGGTGGGGTGAGAGGAACTCTGCCGTGGATGGCTCCAGAACTGCTGAACGGAAGCAGCAGCCTTGTTTCAGAGAAGGTTGACGTATTTTCATTTGGCATTGTGATGTGGGAACTCTTGACTGGATTGGAGCCATACGCTGATTTGCACTATGGTGCTATTATCGGTGGTATAGTGAGCAACACTTTACGCCCTCCTATTCCAGAATGTTGTGATCCAGAATGGACAATGTTGATGGAGAGGTGCTGGTCATCAGAGCCATCAGAGAGACCAACCTTCACTGAGATTGCAAATGAATTGCGATCTATAGCGGCCAAGATCTCTCCCAAAGCACAAAACTCTCCCAAAGGACAAACCCAACAGCTGCAACACTCTCCAGTGCAAACTCAACTCCACAAATGA 4173 0.4642 MAFDQNSVPLDLRPLNVAAAMAEEPMISPATLTPPTPNSVGELFYQPASSAGTTWCVRPITHANVSPAAAYGFNYGASSFGSRVFAGNALSLGKLVGCNGLEKACNDTSGFSYGAGGVRGGRVVGSGGDQGCGDEGGGGGDDSVSGKKVKFLCSFGGKILPRPSDGMLRYVGGQTRIISVRKDVSFNDLVQKMVDTYGQAVVIKYQLPEEDLDSLVSVSCHDDVENMMEEYDKLVEKSSDGSAKLRVFLFSVSETEVSSGMQLGDLQDTGQKYFDAVNGIGMTDAIGFGGGMNMKGSVASAASTQNSDLSGAETFDSSITGQGDVTGVPLSSPKDNVIAASSDTSANMVSSEASAPVYSGVAVSIPMPVGSRASPTPSHSPYFQNEVELERSVPVALAQQPFGLQQAGIEVSSPSPYYQTCVDPSQEVMNHADYVQVTSQMRFTNPQLVGKTGTVLRQQQFHDNTPGLALHHQVIPGVQMAVAPQSSHAGVRQNVIQPQTLVQSQQHLLDQYHDENTSGVRIIQLPAEPSYNTYQVPASQVSPVIVGGNYGWVQVPSQERVVIPDGVSPQQQATSHEKFRRIEDCSMCQTKLPHAHSDPVVPDERGGGAGPVPDSTPSHYSFPMEENIKAQASNRLMPVAMAPLKEGNAEQGAGIRPRVVGKLEPPDGVHHTETTGLSHNIEPQPEEFNHTGNSFFQEKNALKGRKQSPNDELMGTATLSYLDDVGHQHMVPVENWVKDVLINKPMNNDLSMVDRTSLRTSECMVQGSPNEYTNERTGVVSKSDEIHNWIRQDHLKPIDGRMDTFKIHNSDAYVSNDYSFLPADKPSGNDNLGYSTHKSIEEEVILDNFGRSKLIVDANQNNIAAVLPCSSSYRQNSRSGEHNEATQPPIWGIPGSNPQSNIGNPHTEDAALSSSSPSVRFGDVQDTPNSLFSNQDPWNIQHGTFFPPARQSKTALKKETFSCQDPFAEDPGSFGEQSLEAQLDDSLYQSFKQNLTLEHGRSAKGSAEDQQLQAVAENVAASVLHSRNPSNSDLHSRDVSCCDNIEDASVQNNLMDVNCGHTTQEVWSRQLEKTNCGFTASGFGKLQVIKNCDLEEQTELGSGTFGTVYHGKWRGTDVAIKRITERCFAGKPSEQERMRNDFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLRNALQKSDRNLEKRKRLLIAMDVAFGMEYLHGKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKCQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFSFGIVMWELLTGLEPYADLHYGAIIGGIVSNTLRPPIPECCDPEWTMLMERCWSSEPSERPTFTEIANELRSIAAKISPKAQNSPKGQTQQLQHSPVQTQLHK 1390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05005 1390 Gene3D - 169 252 - -
Viun3g05005 1390 ProSiteProfiles Protein kinase domain profile. 1094 1360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05005 1390 MobiDBLite consensus disorder prediction 873 922 - -
Viun3g05005 1390 SUPERFAMILY CAD & PB1 domains 164 255 - -
Viun3g05005 1390 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1087 1181 - -
Viun3g05005 1390 MobiDBLite consensus disorder prediction 673 692 - -
Viun3g05005 1390 SMART serkin_6 1094 1360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05005 1390 SUPERFAMILY Protein kinase-like (PK-like) 1088 1356 IPR011009 -
Viun3g05005 1390 MobiDBLite consensus disorder prediction 594 613 - -
Viun3g05005 1390 CDD STKc_MAP3K-like 1100 1357 - -
Viun3g05005 1390 Pfam PB1 domain 168 251 IPR000270 GO:0005515
Viun3g05005 1390 MobiDBLite consensus disorder prediction 664 692 - -
Viun3g05005 1390 SMART PB1_new 163 252 IPR000270 GO:0005515
Viun3g05005 1390 Gene3D Transferase(Phosphotransferase) domain 1 1182 1390 - -
Viun3g05005 1390 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 168 252 - -
Viun3g05005 1390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1219 1231 IPR008271 GO:0004672|GO:0006468
Viun3g05005 1390 PANTHER SERINE-THREONINE PROTEIN KINASE 215 1361 - -
Viun3g05005 1390 Pfam Protein tyrosine and serine/threonine kinase 1095 1357 IPR001245 GO:0004672|GO:0006468
Viun3g05005 1390 Gene3D Phosphorylase Kinase; domain 1 1087 1181 - -
Viun3g05005 1390 MobiDBLite consensus disorder prediction 1364 1390 - -
Viun3g05005 1390 PRINTS Tyrosine kinase catalytic domain signature 1284 1306 IPR001245 GO:0004672|GO:0006468
Viun3g05005 1390 PRINTS Tyrosine kinase catalytic domain signature 1176 1189 IPR001245 GO:0004672|GO:0006468
Viun3g05005 1390 PRINTS Tyrosine kinase catalytic domain signature 1213 1231 IPR001245 GO:0004672|GO:0006468
Viun3g05005 1390 PRINTS Tyrosine kinase catalytic domain signature 1328 1350 IPR001245 GO:0004672|GO:0006468
Viun3g05005 1390 CDD PB1_UP2 152 250 - -
Viun3g05005 1390 ProSitePatterns Protein kinases ATP-binding region signature. 1100 1131 IPR017441 GO:0005524
Viun3g05005 1390 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1182 1373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05005 Viun-Chr3 56925428 56933200 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05005 147 636 MAP Kinase Kinase Kinase AT3G46920 39.271 8.06e-86 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Viun3g05005 PK_Tyr_Ser-Thr 6.2e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05005 - - gmx:100819234 1982.99