Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05004 ATGGCGTTTGATCAGAATTCGGTTCCATTGGATCTTCGTCCGTTGAATGTGGCCGCCGCGATGGCGGAGGAGCCGATGATTTCGCCGGCCACCCTCACGCCGCCGACTCCGAATTCTGTGGGCGAGCTTTTTTACCAGCCGGCGTCCTCCGCCGGCACAACGTGGTGCGTCCGCCCCATTACGCATGCCAACGTGAGCCCTGCCGCGGCGTATGGGTTTAACTACGGCGCTTCCAGCTTTGGCAGTCGCGTCTTTGCCGGGAATGCTTTGAGTTTGGGGAAGCTTGTGGGGTGTAATGGATTGGAGAAGGCCTGCAATGATACAAGTGGTTTTAGTTATGGTGCTGGCGGGGTTCGGGGAGGCAGAGTGGTCGGTAGTGGAGGCGATCAGGGTTGCGGGGATGAGGGTGGTGGCGGCGGTGATGATTCGGTGTCCGGGAAGAAGGTGAAGTTTCTCTGCAGTTTTGGTGGGAAGATTTTGCCTAGGCCTAGTGATGGAATGTTGAGATATGTTGGGGGCCAAACAAGGATCATCAGTGTTAGGAAGGATGTGAGTTTCAATGATTTGGTGCAGAAGATGGTTGACACTTATGGGCAGGCTGTGGTTATCAAGTATCAGCTTCCTGAGGAGGATCTTGATTCCTTGGTGTCCGTGTCATGTCACGATGATGTTGAGAATATGATGGAAGAGTATGATAAGTTGGTTGAGAAATCTTCCGACGGTTCTGCAAAACTAAGAGTTTTTCTGTTTTCTGTTTCGGAGACGGAAGTTTCTAGTGGGATGCAGTTGGGGGACTTGCAGGATACCGGGCAGAAATATTTTGATGCTGTGAATGGGATTGGTATGACAGATGCGATTGGGTTTGGCGGTGGGATGAATATGAAGGGGAGTGTTGCAAGTGCTGCTTCAACCCAGAATTCGGATTTGAGCGGGGCTGAGACTTTTGATAGTTCAATTACTGGTCAAGGGGATGTCACTGGGGTGCCCTTGTCATCACCTAAGGATAATGTGATAGCAGCTTCCTCAGACACAAGTGCTAATATGGTGAGTTCAGAGGCCAGTGCACCGGTTTACTCGGGTGTTGCGGTTTCGATACCCATGCCTGTGGGTAGTAGGGCTAGTCCAACCCCATCCCACAGCCCTTATTTTCAGAATGAGGTTGAGTTAGAAAGGTCTGTTCCTGTTGCTTTGGCCCAGCAGCCTTTTGGATTGCAGCAAGCTGGAATAGAAGTTTCATCCCCTTCACCTTATTATCAGACTTGTGTTGATCCTAGCCAGGAGGTTATGAACCATGCGGACTATGTGCAGGTTACTTCACAGATGAGGTTCACAAACCCTCAGCTTGTAGGAAAGACCGGGACTGTCTTGAGGCAACAGCAGTTTCATGATAATACTCCCGGCTTAGCATTGCATCATCAGGTCATCCCTGGGGTACAAATGGCTGTGGCTCCACAATCTTCTCACGCTGGTGTGAGACAGAATGTTATTCAACCACAAACCTTGGTGCAATCACAGCAGCATCTTTTGGATCAATACCACGATGAAAATACATCAGGGGTAAGGATTATCCAGCTTCCTGCTGAACCTAGCTACAACACTTACCAGGTTCCAGCGAGTCAAGTATCACCTGTCATAGTTGGAGGCAATTATGGCTGGGTTCAGGTTCCTTCACAAGAGCGCGTTGTTATCCCGGATGGAGTATCACCCCAACAACAGGCAACGAGTCATGAGAAATTCCGAAGAATCGAGGACTGTTCTATGTGTCAAACAAAACTACCTCATGCACATTCTGATCCAGTAGTTCCGGATGAGCGTGGTGGTGGTGCAGGTCCTGTTCCTGATTCAACCCCAAGTCACTATAGCTTCCCAATGGAGGAGAACATAAAAGCTCAAGCATCAAATAGGCTTATGCCAGTGGCGATGGCGCCCTTGAAGGAAGGCAATGCTGAACAAGGGGCTGGGATCAGACCCAGGGTCGTTGGCAAACTGGAACCTCCTGATGGAGTGCATCATACTGAGACCACTGGGCTTTCTCATAATATTGAGCCACAGCCGGAAGAATTTAATCACACCGGGAATTCATTTTTCCAGGAAAAAAATGCATTGAAAGGTAGAAAACAATCTCCAAATGATGAGCTCATGGGAACAGCAACACTGTCTTATTTAGATGATGTTGGCCACCAACACATGGTACCAGTTGAAAACTGGGTTAAAGATGTGCTTATTAACAAACCTATGAATAATGATTTGTCTATGGTCGATAGAACATCTTTGCGAACTTCAGAGTGTATGGTTCAAGGATCTCCAAATGAATATACTAATGAACGTACTGGGGTTGTTTCTAAATCAGATGAGATACATAATTGGATTAGACAAGACCATCTAAAACCAATTGATGGAAGGATGGACACCTTCAAGATACACAATTCTGATGCTTATGTAAGTAATGACTACTCTTTTCTGCCAGCTGATAAACCCAGTGGGAATGATAATTTAGGTTACAGCACTCATAAATCTATAGAGGAAGAGGTGATTCTGGATAACTTTGGCAGGTCAAAGTTGATAGTTGATGCAAATCAAAATAATATTGCAGCTGTGCTGCCTTGTTCTTCTTCATACAGGCAAAATTCCAGGTCAGGGGAACACAATGAGGCTACACAACCCCCTATTTGGGGCATTCCCGGCTCAAATCCTCAATCGAATATTGGAAACCCCCACACCGAAGATGCAGCACTATCTTCATCATCTCCATCCGTCAGGTTTGGAGATGTGCAGGATACTCCGAACTCACTGTTCAGCAATCAGGATCCATGGAATATACAGCATGGTACCTTCTTTCCACCTGCTAGACAAAGCAAAACTGCATTGAAGAAAGAAACCTTTTCTTGCCAGGATCCCTTTGCTGAGGATCCTGGTAGCTTTGGGGAACAAAGTTTAGAAGCACAGTTGGATGATAGCCTCTATCAGTCATTCAAACAAAATTTAACCTTAGAACATGGTCGCTCAGCCAAAGAAGACCAACAACTCCAAGCTGTTGCGGAAAATGTAGCTGCCTCTGTTTTGCACTCAAGAAATCCTTCAAATTCTGACTTGCATTCCAGAGATGTTTCCTGCTGTGATAACATTGAGGATGCCAGTGTTCAAAATAATCTTATGGATGTAAACTGTGGACATACAACTCAGGAGGTCTGGAGCAGGCAACTAGAAAAAACAAATTGTGGCTTTACAGCATCAGGTTTTGGAAAATTACAGGTTATAAAGAACTGTGATCTTGAAGAACAGACAGAACTGGGTTCTGGTACGTTTGGTACCGTATATCATGGAAAATGGAGGGGCACTGATGTTGCAATCAAGCGCATTACTGAAAGATGTTTTGCTGGAAAGCCTTCAGAGCAAGAACGCATGAGAAATGACTTCTGGAATGAGGCAATCAAGCTTGCTGACTTGCACCATCCAAATGTGGTAGCTTTCTACGGTGTTGTGCTTGATGGCCCTGGTGGTTCTGTGGCAACGGTTACTGAATATATGGTTAATGGTTCCTTAAGGAATGCCTTGCAGAAGAGTGACAGGAATCTTGAAAAGCGCAAGCGACTTTTGATTGCAATGGACGTGGCCTTTGGCATGGAGTACCTACATGGAAAAAACATAGTACACTTTGACTTGAAAAGTGACAACTTGCTTGTTAATCTCCGAGATCCACACCGACCAATATGCAAGGTTGGAGACTTGGGTCTGTCGAAAGTAAAATGTCAGACACTGATCTCTGGTGGGGTGAGAGGAACTCTGCCGTGGATGGCTCCAGAACTGCTGAACGGAAGCAGCAGCCTTGTTTCAGAGAAGGTTGACGTATTTTCATTTGGCATTGTGATGTGGGAACTCTTGACTGGATTGGAGCCATACGCTGATTTGCACTATGGTGCTATTATCGGTGGTATAGTGAGCAACACTTTACGCCCTCCTATTCCAGAATGTTGTGATCCAGAATGGACAATGTTGATGGAGAGGTGCTGGTCATCAGAGCCATCAGAGAGACCAACCTTCACTGAGATTGCAAATGAATTGCGATCTATAGCGGCCAAGATCTCTCCCAAAGCACAAAACTCTCCCAAAGGACAAACCCAACAGCTGCAACACTCTCCAGTGCAAACTCAACTCCACAAATGA 4164 0.464 MAFDQNSVPLDLRPLNVAAAMAEEPMISPATLTPPTPNSVGELFYQPASSAGTTWCVRPITHANVSPAAAYGFNYGASSFGSRVFAGNALSLGKLVGCNGLEKACNDTSGFSYGAGGVRGGRVVGSGGDQGCGDEGGGGGDDSVSGKKVKFLCSFGGKILPRPSDGMLRYVGGQTRIISVRKDVSFNDLVQKMVDTYGQAVVIKYQLPEEDLDSLVSVSCHDDVENMMEEYDKLVEKSSDGSAKLRVFLFSVSETEVSSGMQLGDLQDTGQKYFDAVNGIGMTDAIGFGGGMNMKGSVASAASTQNSDLSGAETFDSSITGQGDVTGVPLSSPKDNVIAASSDTSANMVSSEASAPVYSGVAVSIPMPVGSRASPTPSHSPYFQNEVELERSVPVALAQQPFGLQQAGIEVSSPSPYYQTCVDPSQEVMNHADYVQVTSQMRFTNPQLVGKTGTVLRQQQFHDNTPGLALHHQVIPGVQMAVAPQSSHAGVRQNVIQPQTLVQSQQHLLDQYHDENTSGVRIIQLPAEPSYNTYQVPASQVSPVIVGGNYGWVQVPSQERVVIPDGVSPQQQATSHEKFRRIEDCSMCQTKLPHAHSDPVVPDERGGGAGPVPDSTPSHYSFPMEENIKAQASNRLMPVAMAPLKEGNAEQGAGIRPRVVGKLEPPDGVHHTETTGLSHNIEPQPEEFNHTGNSFFQEKNALKGRKQSPNDELMGTATLSYLDDVGHQHMVPVENWVKDVLINKPMNNDLSMVDRTSLRTSECMVQGSPNEYTNERTGVVSKSDEIHNWIRQDHLKPIDGRMDTFKIHNSDAYVSNDYSFLPADKPSGNDNLGYSTHKSIEEEVILDNFGRSKLIVDANQNNIAAVLPCSSSYRQNSRSGEHNEATQPPIWGIPGSNPQSNIGNPHTEDAALSSSSPSVRFGDVQDTPNSLFSNQDPWNIQHGTFFPPARQSKTALKKETFSCQDPFAEDPGSFGEQSLEAQLDDSLYQSFKQNLTLEHGRSAKEDQQLQAVAENVAASVLHSRNPSNSDLHSRDVSCCDNIEDASVQNNLMDVNCGHTTQEVWSRQLEKTNCGFTASGFGKLQVIKNCDLEEQTELGSGTFGTVYHGKWRGTDVAIKRITERCFAGKPSEQERMRNDFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLRNALQKSDRNLEKRKRLLIAMDVAFGMEYLHGKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKCQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFSFGIVMWELLTGLEPYADLHYGAIIGGIVSNTLRPPIPECCDPEWTMLMERCWSSEPSERPTFTEIANELRSIAAKISPKAQNSPKGQTQQLQHSPVQTQLHK 1387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05004 1387 SUPERFAMILY Protein kinase-like (PK-like) 1085 1353 IPR011009 -
Viun3g05004 1387 CDD STKc_MAP3K-like 1097 1354 - -
Viun3g05004 1387 SMART serkin_6 1091 1357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05004 1387 ProSitePatterns Protein kinases ATP-binding region signature. 1097 1128 IPR017441 GO:0005524
Viun3g05004 1387 MobiDBLite consensus disorder prediction 873 922 - -
Viun3g05004 1387 Gene3D Transferase(Phosphotransferase) domain 1 1179 1387 - -
Viun3g05004 1387 SUPERFAMILY CAD & PB1 domains 164 255 - -
Viun3g05004 1387 Gene3D - 169 252 - -
Viun3g05004 1387 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1084 1178 - -
Viun3g05004 1387 MobiDBLite consensus disorder prediction 673 692 - -
Viun3g05004 1387 PANTHER SERINE-THREONINE PROTEIN KINASE 215 1358 - -
Viun3g05004 1387 Gene3D Phosphorylase Kinase; domain 1 1084 1178 - -
Viun3g05004 1387 MobiDBLite consensus disorder prediction 594 613 - -
Viun3g05004 1387 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1179 1370 - -
Viun3g05004 1387 MobiDBLite consensus disorder prediction 664 692 - -
Viun3g05004 1387 SMART PB1_new 163 252 IPR000270 GO:0005515
Viun3g05004 1387 Pfam Protein tyrosine and serine/threonine kinase 1092 1354 IPR001245 GO:0004672|GO:0006468
Viun3g05004 1387 ProSiteProfiles Protein kinase domain profile. 1091 1357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05004 1387 PRINTS Tyrosine kinase catalytic domain signature 1173 1186 IPR001245 GO:0004672|GO:0006468
Viun3g05004 1387 PRINTS Tyrosine kinase catalytic domain signature 1281 1303 IPR001245 GO:0004672|GO:0006468
Viun3g05004 1387 PRINTS Tyrosine kinase catalytic domain signature 1210 1228 IPR001245 GO:0004672|GO:0006468
Viun3g05004 1387 PRINTS Tyrosine kinase catalytic domain signature 1325 1347 IPR001245 GO:0004672|GO:0006468
Viun3g05004 1387 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 168 252 - -
Viun3g05004 1387 Pfam PB1 domain 168 251 IPR000270 GO:0005515
Viun3g05004 1387 MobiDBLite consensus disorder prediction 1361 1387 - -
Viun3g05004 1387 CDD PB1_UP2 152 250 - -
Viun3g05004 1387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1216 1228 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05004 Viun-Chr3 56925427 56933200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05004 147 636 MAP Kinase Kinase Kinase AT3G46920 39.271 8.93e-86 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Viun3g05004 PK_Tyr_Ser-Thr 6.2e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05004 - - gmx:100819234 1972.21