Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05000 ATGTGGCACCTCCACCTCTCGCTCCATTCATCAGAAGCTAGAATTAGCTGCAGTCCCCCTGCTGAAACTTCAACTTCATCTGGTATGAGAACCGAGTTCCATGGGAATACTAGTGCTGGAAGTTCTTATAGAAACGTTGCAACACAGATTCAGAGGAATCGCTTGTCTGAAAATGAGGAGCAAGCCCCTCCTTGTCAGGTAAGTAGTGCTGGTCATAGTGGTCGTGAATCATGTAGTGATAGTAGCAACACAGCTAGTACTTCATTTGTAGCACAGCAGTCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAGGATGTAGTTAATGACGTTAATAATCCAGTGGTTAGAGGTGGTGGTGTCTCTCAAGTCTCTAATGAGACAGTGCATCCAAGAAGTTCAACCCCTCAGGAGCATGGGGAAATTTCAGTTGAGAATCACACTAGTGCATTCATATCTATCCAGAATTCTTCCAACTTTGTTTCTCAAGGTTCCAACTCAGCAGCAACGTCTCAAGGGCCAGAAGAAGAACCATGTCGTGAGACAATACCTTCAGGTTTAGGCATTCTCGTATCCAATCGGGAAAGAGGAACAGGAAACGATAGTGTGCTTCAAGTTGATGTAGTCACAATATCTTCCAACATTTTGTCTGGAAGCAATGCTGATGCCAATGATCATGACGTTAGAAGGAATGGAAGAAGGTTATTTTGGGATGCTTTTTCACGCCGTAGTTCTAGAAGGCTCGGTGATTCTCCAACCTTTGTCTTCTCTACCGGAGGCGCTGATGATCCTGGATCTCAAGATCGGTGGCTAGTTGATTTTGGTGGTGATTTGTCAAATGATGGGGTTGGAGGTGCTTCTGCATACATGGGCAGTAGAATTCACAGATTGAATGAACGAAGAATGCGGCACTCGAGATCGGAGATCTGGGATAGGCTTCGTGGCGGCTTTGACGAGATTGGGCGATGGAATTCATGTCCACTAGGACTCCATGCAGATGGCATGTGCTCATGTGAGTCTTCCCCAATGGCTGAGGAATCAAGCACTCGAGCAAGTATTTCAAGAATAGTCATGCTGGCTGAGGCTTTGTTTGAGGTTTTAGATGAAATCCATCGACAACCTGGATCACTGTCTCTATCCATGGTCTCACTCCCTGCCCCTGAATCAATTGTTGATTCCTTTCCCCTGAAATCTCACAAAAAGGTTGAAATGGCTGACGGAGGCAATGATGTTGAACAATGTTACATATGTCTGGCGGAGTACGAAGAAGGGGACCAAATACGAGTTCTTCCTTGCCTCCATGAGTATCACATGTCATGTGTGGATAAGTGGCTTAAAGAAATACACGGTGTATGTCCTCTGTGCCGTGGCAATGTCTGTGGAGGGTTCACAGAGTCTTCTACCAACTCAGAAGTGCAATCTCACTGA 1431 0.4549 MWHLHLSLHSSEARISCSPPAETSTSSGMRTEFHGNTSAGSSYRNVATQIQRNRLSENEEQAPPCQVSSAGHSGRESCSDSSNTASTSFVAQQSSDPVSVNVSANKDVVNDVNNPVVRGGGVSQVSNETVHPRSSTPQEHGEISVENHTSAFISIQNSSNFVSQGSNSAATSQGPEEEPCRETIPSGLGILVSNRERGTGNDSVLQVDVVTISSNILSGSNADANDHDVRRNGRRLFWDAFSRRSSRRLGDSPTFVFSTGGADDPGSQDRWLVDFGGDLSNDGVGGASAYMGSRIHRLNERRMRHSRSEIWDRLRGGFDEIGRWNSCPLGLHADGMCSCESSPMAEESSTRASISRIVMLAEALFEVLDEIHRQPGSLSLSMVSLPAPESIVDSFPLKSHKKVEMADGGNDVEQCYICLAEYEEGDQIRVLPCLHEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTESSTNSEVQSH 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05000 476 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 10 475 - -
Viun3g05000 476 MobiDBLite consensus disorder prediction 9 93 - -
Viun3g05000 476 MobiDBLite consensus disorder prediction 111 143 - -
Viun3g05000 476 SMART ring_2 415 456 IPR001841 -
Viun3g05000 476 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 381 461 IPR013083 -
Viun3g05000 476 SUPERFAMILY RING/U-box 405 460 - -
Viun3g05000 476 FunFam Putative RING zinc finger domain superfamily protein 382 462 - -
Viun3g05000 476 ProSiteProfiles Zinc finger RING-type profile. 415 457 IPR001841 -
Viun3g05000 476 MobiDBLite consensus disorder prediction 162 184 - -
Viun3g05000 476 MobiDBLite consensus disorder prediction 117 143 - -
Viun3g05000 476 Pfam Ring finger domain 414 457 IPR001841 -
Viun3g05000 476 MobiDBLite consensus disorder prediction 11 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05000 Viun-Chr3 56900988 56904353 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05000 290 461 C3H Transcription Factor Family AT5G45290 47.396 3.76e-41 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05000 - - gmx:100783604 766.148