Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04998 ATGAAGAAAAGCTCCAAGTTGATCATGGGTTCCTCCTCCAGTAGACTTTCCACTCGCCCTTCTGCTTCTTCTACTCACAGGGTCAACCGTTTCAGATTATCGTCTCTTCTATGTGGCACCTCCACCTCTCGCTCCATTCATCAGATGGAAGAACATTCATCTGAACTTCAGGTTCATTTAGCAAGAAATTTTGATGGTGAAATTCATAAAGTCACTGAGGAATCATCTTTATCATGTACAGAAGCTAGAATTAGCTGCAGTCCCCCTGCTGAAACTTCAACTTCATCTGGTATGAGAACCGAGTTCCATGGGAATACTAGTGCTGGAAGTTCTTATAGAAACGTTGCAACACAGATTCAGAGGAATCGCTTGTCTGAAAATGAGGAGCAAGCCCCTCCTTGTCAGGTAAGTAGTGCTGGTCATAGTGGTCGTGAATCATGTAGTGATAGTAGCAACACAGCTAGTACTTCATTTGTAGCACAGCAGTCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAGGATGTAGTTAATGACGTTAATAATCCAGTGGTTAGAGGTGGTGGTGTCTCTCAAGTCTCTAATGAGACAGTGCATCCAAGAAGTTCAACCCCTCAGGAGCATGGGGAAATTTCAGTTGAGAATCACACTAGTGCATTCATATCTATCCAGAATTCTTCCAACTTTGTTTCTCAAGGTTCCAACTCAGCAGCAACGTCTCAAGGGCCAGAAGAAGAACCATGTCGTGAGACAATACCTTCAGGTTTAGGCATTCTCGTATCCAATCGGGAAAGAGGAACAGGAAACGATAGTGTGCTTCAAGTTGATGTAGTCACAATATCTTCCAACATTTTGTCTGGAAGCAATGCTGATGCCAATGATCATGACGTTAGAAGGAATGGAAGAAGGTTATTTTGGGATGCTTTTTCACGCCGTAGTTCTAGAAGGCTCGGTGATTCTCCAACCTTTGTCTTCTCTACCGGAGGCGCTGATGATCCTGGATCTCAAGATCGGTGGCTAGTTGATTTTGGTGGTGATTTGTCAAATGATGGGGTTGGAGGTGCTTCTGCATACATGGGCAGTAGAATTCACAGATTGAATGAACGAAGAATGCGGCACTCGAGATCGGAGATCTGGGATAGGCTTCGTGGCGGCTTTGACGAGATTGGGCGATGGAATTCATGTCCACTAGGACTCCATGCAGATGGCATGTGCTCATGTGAGTCTTCCCCAATGGCTGAGGAATCAAGCACTCGAGCAAGTATTTCAAGAATAGTCATGCTGGCTGAGGCTTTGTTTGAGGTTTTAGATGAAATCCATCGACAACCTGGATCACTGTCTCTATCCATGGTCTCACTCCCTGCCCCTGAATCAATTGTTGATTCCTTTCCCCTGAAATCTCACAAAAAGGTTGAAATGGCTGACGGAGGCAATGATGTTGAACAATGTTACATATGTCTGGCGGAGTACGAAGAAGGGGACCAAATACGAGTTCTTCCTTGCCTCCATGAGTATCACATGTCATGTGTGGATAAGTGGCTTAAAGAAATACACGGTGTATGTCCTCTGTGCCGTGGCAATGTCTGTGGAGGGTTCACAGAGTCTTCTACCAACTCAGAAGTGCAATCTCACTGA 1638 0.4481 MKKSSKLIMGSSSSRLSTRPSASSTHRVNRFRLSSLLCGTSTSRSIHQMEEHSSELQVHLARNFDGEIHKVTEESSLSCTEARISCSPPAETSTSSGMRTEFHGNTSAGSSYRNVATQIQRNRLSENEEQAPPCQVSSAGHSGRESCSDSSNTASTSFVAQQSSDPVSVNVSANKDVVNDVNNPVVRGGGVSQVSNETVHPRSSTPQEHGEISVENHTSAFISIQNSSNFVSQGSNSAATSQGPEEEPCRETIPSGLGILVSNRERGTGNDSVLQVDVVTISSNILSGSNADANDHDVRRNGRRLFWDAFSRRSSRRLGDSPTFVFSTGGADDPGSQDRWLVDFGGDLSNDGVGGASAYMGSRIHRLNERRMRHSRSEIWDRLRGGFDEIGRWNSCPLGLHADGMCSCESSPMAEESSTRASISRIVMLAEALFEVLDEIHRQPGSLSLSMVSLPAPESIVDSFPLKSHKKVEMADGGNDVEQCYICLAEYEEGDQIRVLPCLHEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTESSTNSEVQSH 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04998 545 MobiDBLite consensus disorder prediction 1 26 - -
Viun3g04998 545 ProSiteProfiles Zinc finger RING-type profile. 484 526 IPR001841 -
Viun3g04998 545 FunFam Putative RING zinc finger domain superfamily protein 451 531 - -
Viun3g04998 545 SUPERFAMILY RING/U-box 474 529 - -
Viun3g04998 545 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 450 530 IPR013083 -
Viun3g04998 545 MobiDBLite consensus disorder prediction 180 212 - -
Viun3g04998 545 SMART ring_2 484 525 IPR001841 -
Viun3g04998 545 MobiDBLite consensus disorder prediction 186 212 - -
Viun3g04998 545 Pfam Ring finger domain 483 526 IPR001841 -
Viun3g04998 545 MobiDBLite consensus disorder prediction 82 168 - -
Viun3g04998 545 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 9 544 - -
Viun3g04998 545 MobiDBLite consensus disorder prediction 231 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04998 Viun-Chr3 56900896 56904621 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04998 359 530 C3H Transcription Factor Family AT5G45290 47.396 9.16e-41 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04998 - - gmx:100783722 858.981