Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04996 ATGTGTGTGCAAGAGGGTGAACAAGTTGGTGAGGATACAGAGAAGAACGTTGATAACAGAAGGGTGTCATGGCCTTTGCATTGTGATCTCTTGCATGCCCAGATGGAAAACAGGGAAAAAGACTCTTCCTTTAGAACCCCCACTGACCAGATCACTGTTGCAAATTCATTTCCTCTGGAAAGCATATGTGAGGATACAGAAACTGTGGACAAAAAGCAGAACCTGATGAACTTTGTCCCTACTCTTCGGTCTGGTGAGTGGAGTGATATTGGAGAACGCTCTTCCATGGAGGATACACACATATGCATTGGAGACTTGGCCAAAAAATTTGGCAATAACGTACTTTCTGAGGAAGCTATTTCCTTTTATGGTGTATTTGATGGACACGGAGGGAAGAGTGCTGCACTATTCGTTCGTGATCATCTACCACGAGTGATTGTTGAGGATGCTGACTTTCCTTTGGAACTTGAGAAGGTTGTCACAAGGTCATTTTTGGAGACTGATGCAGAGTTTGCAAGATCATGTTCTATTGAGTCTTCCCTGTCTTCTGGCACAACTGCACTCACTGCAATTATATTTGGAAGGTCTTTACTTGTAGCCAATGCCGGAGACTGCCGTGCCGTGTTATCTCGTGGCGGCCGAGCTGTAGAAATGTCCAAAGATCACAGGCCGTTGTGCATGAAAGAAAGGATGAGGGTTGAGTCTGTAGGTGGATACATAGATGATGGTTACCTGAATGGGCAGTTAGGTGTGACTCGTGCTCTAGGGGACTGGCATCTTGAAGGAATGAAGGAGATGAATGGAAAGCATGGACCATTGAGTGCTGAGCCTGAACTTAAATTGATGACATTGAGCAAAGAAGATGAGTTTTTGATAATTGGGAGTGATGGAATATGGGATGTTTTTCGCAGCCAGAACGCAGTGGACTTTGCTCGAAGGAGGCTTCAAGAACACAATGATGTGAAGCAGTGTTGCAAGGAGATAATAGGAGAAGCAATGAAGAGAGAAGCAACAGACAATTTGACAGTGGTGATGGTGTGTTTTCACTCAGAACCACCACCTCCTGTGGTAGTAGAAAGGCCTAGAGTCAGAAGAAGCATATCTGCTGAAGGACTTCAAAATCTTAAATGCTTGCTAGAAGGATAG 1146 0.4459 MCVQEGEQVGEDTEKNVDNRRVSWPLHCDLLHAQMENREKDSSFRTPTDQITVANSFPLESICEDTETVDKKQNLMNFVPTLRSGEWSDIGERSSMEDTHICIGDLAKKFGNNVLSEEAISFYGVFDGHGGKSAALFVRDHLPRVIVEDADFPLELEKVVTRSFLETDAEFARSCSIESSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRGGRAVEMSKDHRPLCMKERMRVESVGGYIDDGYLNGQLGVTRALGDWHLEGMKEMNGKHGPLSAEPELKLMTLSKEDEFLIIGSDGIWDVFRSQNAVDFARRRLQEHNDVKQCCKEIIGEAMKREATDNLTVVMVCFHSEPPPPVVVERPRVRRSISAEGLQNLKCLLEG 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04996 381 SUPERFAMILY PP2C-like 74 350 IPR036457 -
Viun3g04996 381 PANTHER PROTEIN PHOSPHATASE 2C 70 346 IPR015655 GO:0004722|GO:0006470
Viun3g04996 381 ProSitePatterns PPM-type phosphatase domain signature. 122 130 IPR000222 GO:0043169
Viun3g04996 381 CDD PP2Cc 83 348 IPR001932 -
Viun3g04996 381 FunFam Probable protein phosphatase 2C 22 66 351 - -
Viun3g04996 381 ProSiteProfiles PPM-type phosphatase domain profile. 83 348 IPR001932 -
Viun3g04996 381 SMART PP2C_4 73 346 IPR001932 -
Viun3g04996 381 Gene3D - 63 352 IPR036457 -
Viun3g04996 381 Pfam Protein phosphatase 2C 92 340 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04996 Viun-Chr3 56885284 56888551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04996 45 381 PP2C-type Phosphatase Gene Family AT2G25620 57.185 2.67e-137 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Viun3g04996 PP2C 2.3e-65 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04996 K14803 - gmx:100782648 673.315