Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04994 ATGGGAAGTAATAGCACTGAAAAGATCCCAATCAATACCAGTGCTGAAAGTTCAGAAACCACTATTGAAATAAAGATTAAAACATTGGATTCTCAAACGTACACCCTCAGAGTGGATAAACAGATGCCAGTCCCTGCCCTGAAAGAACAGATTGCTTCTGTAACTGGAGTATTATCTGAACGGCAACGCTTAATTTGCCAAGGAAAAGTTCTGAAGGATGATCAGCTCCTGTCTGCATATCATGTTGAAGATGGTCATACCTTACATCTGGTTGCGAGGCAACCTGACCTACCACCACCAGGAAGTCTGCCCAATCATTCAGTGACTGAACCGAATTCAAGCTCAAGCCTGGCAAGCCTCAGTCACAGTAGTCAAGTAGCCCCTGGTGTTTTTATTGAGACTTTCAATGTGCCTTTTCAGGGTGATGGAGTTGCACCTGAAATCAATAGGATCGTTTCTGCTGTTCTAGGATCCATTGGACTTCAAAATTTTGCGAGTGGTGAAGGGATTGATGTCAGGGAGCATGATTCCCAAGGTGCTGGGAGAATTTCAGGCTCTAGTGGGATATTTGATTCATCTCATCCTCAACCCGAACAATCAGGTTTTCGGATTTTGTCTGATAGATCACGTAATGCCTTTGGAGCTCCAGCGGCAGTATCTCTAGGGTCTCTGCAGCCTCCTGTCATTCCTGATTCTTTGACAACTTTGTCCCAATATTTAAGTCACATAAGCAATGAATTTGATGCAATTGTGAGAGAAGGGGGGAATATTGCCCAAGCAGCTGAGGCTCAAAGGAACGTAGAAACTAGACCTGTTTCTTCACGTTCAGGGTCAGGTTCAGCTTTAGAAGGGTTTTCATCTCCCACATTGTTGGCAGAAGTTCTGCTTTCTACCAGACGAATGATTGTTGAACAAGCTGGCGAATGCTTACTTCAACTATCAAGGCAGCTAGAGAATCAAGCAGATGTAACCGATCCACTGTTGCGGTCAAGCATTCAGTCTAGGGCCTTGAGAACTGGAGTTTTGTTTTATAACCTTGGTGCATTTTTACTTGAACTTGGTCGCACAACCATGACACTGCGTTTGGGTCAAACATCGTCTGAAGCTGTAGTTAATGGTGGGCCTGCAGTTTTTATATCCCCAAATGGTCCTAACCATATCATGGTTCAGCCCCTTCCTTTTCAACCTGGAACAAGCTTTGGCGCTGTTCCTGTGGGAGCTGCACAGTCTAGCTCAAGTTTAGGTAGTGGACTTGGTTCAAGCTTTTTCCCTAGGCGTATAGATATACAGATACGACGAGGTACCTCATCAACATCATCCAATACCAATCAAGAAGAACGCAATGATACACAACCTGCCTCAGTACAAAGAAATCCAGGTGAAAATCCTGTTAATCAGGCAACCTCTAGGCGTCCAGATGCTTCTTTTCCTGGGGAACCAGGAGTAAGGTTAGTGCCTATTAGAACCATGGTTGCAGCAGCAGTACCGGGTCCTGTGGTCCGTCCCCCTTCAGAATCATCTGGTAATTCTCTAGGGCTTTACTATCCAATTCTTGGGAGATTTCAACATGTGTCTTCTGGACATGTAAATAGTGAACAGAGATCTCAACATTCAAGTCAGCATCATGCTGCAGTACCATCAACTACTGATTCCATGTTGGAAAGGCAAACCACAGATGATTCTACAAGGAATGGATCCTTATCAACTCCAAGCACAAGACCGGAGCCATCTAATTCTCGTGTTGTAAATATCAATATTCTGGCTGCCAGTGGACCCCAAAACAACCAAGAAACTGAGCGGCAAATACCAAGCAGTGTACTTCAGTTATTAAGGTCACTCTTTCCTGGTGGAGAAATTCATGTGGAAGATTCAAGTGTACAAGGAGTAACTGCAGGTTCTGACTCAGATCATGCTGCAACATCAAGGGGGGCTGCCCAAGTACCCGAAGCACAACCTAATGCCAGTGAAGAAGGAATATTTTTGTCAAATATGCTCCGTGAAATCATGCCAGTCATATCTCAACAAGTAGGGTTGGAGGGAAATCCTTCAGAAGATCATATGGCTCAAGCTTCTTCAACCCAGGTTGAAACTGATGTCGGGACATCACGCAGACCGGGTGATTCTGACTCAAGCCCCCCAAATCCAAAACGTCAAAAGATGGAGTGA 2166 0.4474 MGSNSTEKIPINTSAESSETTIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASVTGVLSERQRLICQGKVLKDDQLLSAYHVEDGHTLHLVARQPDLPPPGSLPNHSVTEPNSSSSLASLSHSSQVAPGVFIETFNVPFQGDGVAPEINRIVSAVLGSIGLQNFASGEGIDVREHDSQGAGRISGSSGIFDSSHPQPEQSGFRILSDRSRNAFGAPAAVSLGSLQPPVIPDSLTTLSQYLSHISNEFDAIVREGGNIAQAAEAQRNVETRPVSSRSGSGSALEGFSSPTLLAEVLLSTRRMIVEQAGECLLQLSRQLENQADVTDPLLRSSIQSRALRTGVLFYNLGAFLLELGRTTMTLRLGQTSSEAVVNGGPAVFISPNGPNHIMVQPLPFQPGTSFGAVPVGAAQSSSSLGSGLGSSFFPRRIDIQIRRGTSSTSSNTNQEERNDTQPASVQRNPGENPVNQATSRRPDASFPGEPGVRLVPIRTMVAAAVPGPVVRPPSESSGNSLGLYYPILGRFQHVSSGHVNSEQRSQHSSQHHAAVPSTTDSMLERQTTDDSTRNGSLSTPSTRPEPSNSRVVNINILAASGPQNNQETERQIPSSVLQLLRSLFPGGEIHVEDSSVQGVTAGSDSDHAATSRGAAQVPEAQPNASEEGIFLSNMLREIMPVISQQVGLEGNPSEDHMAQASSTQVETDVGTSRRPGDSDSSPPNPKRQKME 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04994 721 MobiDBLite consensus disorder prediction 176 201 - -
Viun3g04994 721 MobiDBLite consensus disorder prediction 92 120 - -
Viun3g04994 721 MobiDBLite consensus disorder prediction 262 281 - -
Viun3g04994 721 MobiDBLite consensus disorder prediction 432 481 - -
Viun3g04994 721 FunFam Large proline-rich protein BAG6 14 107 - -
Viun3g04994 721 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
Viun3g04994 721 MobiDBLite consensus disorder prediction 527 580 - -
Viun3g04994 721 Pfam Ubiquitin family 24 94 IPR000626 GO:0005515
Viun3g04994 721 SMART ubq_7 22 93 IPR000626 GO:0005515
Viun3g04994 721 MobiDBLite consensus disorder prediction 676 713 - -
Viun3g04994 721 MobiDBLite consensus disorder prediction 106 120 - -
Viun3g04994 721 SUPERFAMILY Ubiquitin-like 17 101 IPR029071 -
Viun3g04994 721 MobiDBLite consensus disorder prediction 675 721 - -
Viun3g04994 721 MobiDBLite consensus disorder prediction 432 472 - -
Viun3g04994 721 MobiDBLite consensus disorder prediction 180 201 - -
Viun3g04994 721 Gene3D - 14 106 - -
Viun3g04994 721 PRINTS Ubiquitin signature 53 73 IPR019956 -
Viun3g04994 721 PRINTS Ubiquitin signature 32 52 IPR019956 -
Viun3g04994 721 PRINTS Ubiquitin signature 74 95 IPR019956 -
Viun3g04994 721 MobiDBLite consensus disorder prediction 627 654 - -
Viun3g04994 721 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 10 720 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04994 Viun-Chr3 56852646 56865797 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04994 22 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.500 1.39e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04994 K23390 - gmx:100783070 1143.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04994 3 56852646 56865797 Viun3g04994 3 56852646 56865797 ECH