Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04993 ATGGGAAGTAATAGCACTGAAAAGATCCCAATCAATACCAGTGCTGAAAGTTCAGAAACCACTATTGAAATAAAGATTAAAACATTGGATTCTCAAACGTACACCCTCAGAGTGGATAAACAGATGCCAGTCCCTGCCCTGAAAGAACAGATTGCTTCTGTAACTGGAGTATTATCTGAACGGCAACGCTTAATTTGCCAAGGAAAAGTTCTGAAGGATGATCAGCTCCTGTCTGCATATCATGTTGAAGATGGTCATACCTTACATCTGGTTGCGAGGCAACCTGACCTACCACCACCAGGAAGTCTGCCCAATCATTCAGTGACTGAACCGAATTCAAGCTCAAGCCTGGCAAGCCTCAGTCACAGTAGTCAAGTAGCCCCTGGTGTTTTTATTGAGACTTTCAATGTGCCTTTTCAGGGTGATGGAGTTGCACCTGAAATCAATAGGATCGTTTCTGCTGTTCTAGGATCCATTGGACTTCAAAATTTTGCGAGTGGTGAAGGGATTGATGTCAGGGAGCATGATTCCCAAGGTGCTGGGAGAATTTCAGGCTCTAGTGGGATATTTGATTCATCTCATCCTCAACCCGAACAATCAGGTTTTCGGATTTTGTCTGATAGATCACGTAATGCCTTTGGAGCTCCAGCGGCAGTATCTCTAGGGTCTCTGCAGCCTCCTGTCATTCCTGATTCTTTGACAACTTTGTCCCAATATTTAAGTCACATAAGCAATGAATTTGATGCAATTGTGAGAGAAGGGGGGAATATTGCCCAAGCAGCTGAGGCTCAAAGGAACGTAGAAACTAGACCTGTTTCTTCACGTTCAGGGTCAGGTTCAGCTTTAGAAGGGTTTTCATCTCCCACATTGTTGGCAGAAGTTCTGCTTTCTACCAGACGAATGATTGTTGAACAAGCTGGCGAATGCTTACTTCAACTATCAAGGCAGCTAGAGAATCAAGCAGATGTAACCGATCCACTGTTGCGGTCAAGCATTCAGTCTAGGGCCTTGAGAACTGGAGTTTTGTTTTATAACCTTGGTGCATTTTTACTTGAACTTGGTCGCACAACCATGACACTGCGTTTGGGTCAAACATCGTCTGAAGCTGTAGTTAATGGTGGGCCTGCAGTTTTTATATCCCCAAATGGTCCTAACCATATCATGGTTCAGCCCCTTCCTTTTCAACCTGGAACAAGCTTTGGCGCTGTTCCTGTGGGAGCTGCACAGTCTAGCTCAAGTTTAGGTAGTGGACTTGGTTCAAGCTTTTTCCCTAGGCGTATAGATATACAGATACGACGAGGTACCTCATCAACATCATCCAATACCAATCAAGAAGAACGCAATGATACACAACCTGCCTCAGTACAAAGAAATCCAGGTGAAAATCCTGTTAATCAGGCAACCTCTAGGCGTCCAGATGCTTCTTTTCCTGGGGAACCAGGAGTAAGGTTAGTGCCTATTAGAACCATGGTTGCAGCAGCAGTACCGGGTCCTGTGGTCCGTCCCCCTTCAGAATCATCTGGTAATTCTCTAGGGCTTTACTATCCAATTCTTGGGAGATTTCAACATGTGTCTTCTGGACATGTAAATAGTGAACAGAGATCTCAACATTCAAGTCAGCATCATGCTGCAGTACCATCAACTACTGATTCCATGTTGGAAAGGCAAACCACAGATGATTCTACAAGGAATGTAGGATCCTTATCAACTCCAAGCACAAGACCGGAGCCATCTAATTCTCGTGTTGTAAATATCAATATTCTGGCTGCCAGTGGACCCCAAAACAACCAAGAAACTGAGCGGCAAATACCAAGCAGTGTACTTCAGTTATTAAGGTCACTCTTTCCTGGTGGAGAAATTCATGTGGAAGATTCAAGTGTACAAGGAGTAACTGCAGGTTCTGACTCAGATCATGCTGCAACATCAAGGGGGGCTGCCCAAGTACCCGAAGCACAACCTAATGCCAGTGAAGAAGGAATATTTTTGTCAAATATGCTCCGTGAAATCATGCCAGTCATATCTCAACAAGTAGGGTTGGAGGGAAATCCTTCAGAAGATCATATGGCTCAAGCTTCTTCAACCCAGGTTGAAACTGATGTCGGGACATCACGCAGACCGGGTGATTCTGACTCAAGCCCCCCAAATCCAAAACGTCAAAAGATGGAGTGA 2169 0.4472 MGSNSTEKIPINTSAESSETTIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASVTGVLSERQRLICQGKVLKDDQLLSAYHVEDGHTLHLVARQPDLPPPGSLPNHSVTEPNSSSSLASLSHSSQVAPGVFIETFNVPFQGDGVAPEINRIVSAVLGSIGLQNFASGEGIDVREHDSQGAGRISGSSGIFDSSHPQPEQSGFRILSDRSRNAFGAPAAVSLGSLQPPVIPDSLTTLSQYLSHISNEFDAIVREGGNIAQAAEAQRNVETRPVSSRSGSGSALEGFSSPTLLAEVLLSTRRMIVEQAGECLLQLSRQLENQADVTDPLLRSSIQSRALRTGVLFYNLGAFLLELGRTTMTLRLGQTSSEAVVNGGPAVFISPNGPNHIMVQPLPFQPGTSFGAVPVGAAQSSSSLGSGLGSSFFPRRIDIQIRRGTSSTSSNTNQEERNDTQPASVQRNPGENPVNQATSRRPDASFPGEPGVRLVPIRTMVAAAVPGPVVRPPSESSGNSLGLYYPILGRFQHVSSGHVNSEQRSQHSSQHHAAVPSTTDSMLERQTTDDSTRNVGSLSTPSTRPEPSNSRVVNINILAASGPQNNQETERQIPSSVLQLLRSLFPGGEIHVEDSSVQGVTAGSDSDHAATSRGAAQVPEAQPNASEEGIFLSNMLREIMPVISQQVGLEGNPSEDHMAQASSTQVETDVGTSRRPGDSDSSPPNPKRQKME 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04993 722 MobiDBLite consensus disorder prediction 176 201 - -
Viun3g04993 722 MobiDBLite consensus disorder prediction 92 120 - -
Viun3g04993 722 MobiDBLite consensus disorder prediction 262 281 - -
Viun3g04993 722 MobiDBLite consensus disorder prediction 432 481 - -
Viun3g04993 722 FunFam Large proline-rich protein BAG6 14 107 - -
Viun3g04993 722 Coils Coil 718 722 - -
Viun3g04993 722 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
Viun3g04993 722 MobiDBLite consensus disorder prediction 527 580 - -
Viun3g04993 722 Pfam Ubiquitin family 24 94 IPR000626 GO:0005515
Viun3g04993 722 SMART ubq_7 22 93 IPR000626 GO:0005515
Viun3g04993 722 MobiDBLite consensus disorder prediction 106 120 - -
Viun3g04993 722 MobiDBLite consensus disorder prediction 628 655 - -
Viun3g04993 722 SUPERFAMILY Ubiquitin-like 17 101 IPR029071 -
Viun3g04993 722 MobiDBLite consensus disorder prediction 432 472 - -
Viun3g04993 722 MobiDBLite consensus disorder prediction 180 201 - -
Viun3g04993 722 Gene3D - 14 106 - -
Viun3g04993 722 MobiDBLite consensus disorder prediction 677 714 - -
Viun3g04993 722 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 10 721 - -
Viun3g04993 722 MobiDBLite consensus disorder prediction 676 722 - -
Viun3g04993 722 PRINTS Ubiquitin signature 32 52 IPR019956 -
Viun3g04993 722 PRINTS Ubiquitin signature 53 73 IPR019956 -
Viun3g04993 722 PRINTS Ubiquitin signature 74 95 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04993 Viun-Chr3 56852646 56865797 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04993 22 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.500 1.39e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04993 K23390 - gmx:100783070 1138.64