Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04981 ATGGGAAAGAAAACGAAGCAAGTAGGAGAGACAAGGGAGGATACTAAAATGGGAGATAGCAGTCCCAAAGCTTATGACAATGATACTATGGTGTTCATATCCATGTCTCAAGAATTGAAGAATGAGGGAAACAAGCTGTTCCAAAAGAGGGATCTAGAAGGAGCAATGTTAAAATATGAGAAAGCCCTGAAGTTACTTCCGAGAAATCATATTGATGTGTCCTATCTGAGGAGCAACATGGCTGCATGTTATATGCAGATGGGGGTCAGTGAGTTTCCAAGGGCTATTCATGAATGTGATTTGGCTCTTGTAGTGACACCCAAATATAGCAAAGCACTGTTGAAGAGAGCAAGGTGCTATGAAGCTTTAAATAGGCTGGATTTAGCTCTAAGAGATGTCAGCACTGTTCTGAAGATGGAACCAAATAATGCCATGGCATTAGAGATCTCAGAAAAGGTGAAAAATGCACTTGAAGAGAAAGGATTGAGAGTTAACGATACAATAATTGAGTTGCCTCCAAATTATGTTGAAACTCCAAGTGCCTTGACTCCAGAAAAGGTAGTGAAAGAGAATATGCGGAAGAAGGGCTATGAGGAGGAAAAGAAGGCTCCGAATGACAAAATTCTAGAAAGGAAAACCGAGGAGAAGAAGATCAACACATCCAAGAAGAAGAAGGCCAAGGAAAAAAATGATGAGAAGAAGGCTGATATAAAGGAAGTTATAGAGGAAAGAAGTAATGGTAGAAGGGAACATGTTCCTAACAAAACAGTTAAACTTATTTTTGGTGATGATATACGGTGTGCTGAACTTCCTATCAATTGTAGCCTCTTCCAGTTGAGAGAAGTTATTCAAGATCGATTCTCGAGCCTAGGAGCTGTTCTTGTCAAATACAGGGACCAAGAAGGTGATTTAGTCACAATCACTTCTGATGATGAATTAAGAAGGGTTGAAACAGGATCTCATAGTTGTATCAGACTGTACATAGTAGAAGCCACTCCTGAGCAGGATCCACTTTTTGAGAAATTTAAAGTGAAGGAGGGGGAAGTTGTTGGTATTAACATTGCAGTTGAGAATGGTTGTGTGGGAAAAGCAAATGGAACTGTTAGCTCTTCTTGCATTGAGGATTGGATAATTCAGTTTGCCAAATTGTTCAAGAACCATGTTGGTTTTGAATGTGACAGATATTTGGATTTTCACGAACATGGTATGAAGCTCTATTCCGAGGCTATGGAGGAGACTGTTACAGGCGAAGAAGCACAAGGCCTATTTGACATGGCAGGAGATAAGTTCCAAGAGATGACTGCTCTTGCATTGTTCAACTGGGGAAATGTGCATATCTCTAAGGCAAGGAAAAAGGTGTATAAAACAGAAGACTCTTCTAAAGAGCATGTATGCGAACTGATCAAGAGTTCATATGAATGGGCGCTGGAAGAATATTCAAAGGCAGGAGAAAAATATGATGCAGCCATTAAAATTAAGTCAGATTTTCATGAAGGATTTTTGGCTCTGGGGCTGCAGAAGTTTGAGCAAGCAAAACTTTTGTGGTATCATGCACTCAGTAGTAATGTAGACTTATTAACATTGCCTTCCTCTGAGGTTCTCCATCTTTACAACAATGCTGAAGAAAATATGGAGAAAGGAATGCAGATATGGGAAGAATCTGAAAAGCAGAAGTTGAGTAAAATGTCTGATTCAAATTATTCTATATTGGATTTGCAGAAGATGGGGTTGGATGGGGTTTTTCAAAGTATGTCCTTAGAAGAACTTGCAGCACAAGAGGCACATATGAGGTCTCAAATAAATCTCCTATGGGGTACCATTCTGTATGAACGCTCAATTGTGGAGTTCAAATCAGGGCTACCTGTGTGGCATGAAACTCTTGCGGCTTCAGTTGAGAAATTTGAACTTGCAGGAGCTTCTCCAACAGATATAGCTGTAATTTTGAAGAACCACTGTTCAAACAATACTGCAGTAGATGGTCTTGCCTTCAAAATTGATGAAATAGTACAGGCATGGAATGAGATGTACAAAGCTAAAATGTGGAAGAGTGGAGTTCCATCATTTCGTTTGGAACCCTTATTCAGAAGGCGAGTTTCGAAAACTTATCATGCCTTTGAGCTTGCATGA 2127 0.3977 MGKKTKQVGETREDTKMGDSSPKAYDNDTMVFISMSQELKNEGNKLFQKRDLEGAMLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGVSEFPRAIHECDLALVVTPKYSKALLKRARCYEALNRLDLALRDVSTVLKMEPNNAMALEISEKVKNALEEKGLRVNDTIIELPPNYVETPSALTPEKVVKENMRKKGYEEEKKAPNDKILERKTEEKKINTSKKKKAKEKNDEKKADIKEVIEERSNGRREHVPNKTVKLIFGDDIRCAELPINCSLFQLREVIQDRFSSLGAVLVKYRDQEGDLVTITSDDELRRVETGSHSCIRLYIVEATPEQDPLFEKFKVKEGEVVGINIAVENGCVGKANGTVSSSCIEDWIIQFAKLFKNHVGFECDRYLDFHEHGMKLYSEAMEETVTGEEAQGLFDMAGDKFQEMTALALFNWGNVHISKARKKVYKTEDSSKEHVCELIKSSYEWALEEYSKAGEKYDAAIKIKSDFHEGFLALGLQKFEQAKLLWYHALSSNVDLLTLPSSEVLHLYNNAEENMEKGMQIWEESEKQKLSKMSDSNYSILDLQKMGLDGVFQSMSLEELAAQEAHMRSQINLLWGTILYERSIVEFKSGLPVWHETLAASVEKFELAGASPTDIAVILKNHCSNNTAVDGLAFKIDEIVQAWNEMYKAKMWKSGVPSFRLEPLFRRRVSKTYHAFELA 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04981 708 Gene3D Tetratricopeptide repeat domain 32 167 IPR011990 GO:0005515
Viun3g04981 708 SUPERFAMILY CAD & PB1 domains 253 340 - -
Viun3g04981 708 Coils Coil 209 243 - -
Viun3g04981 708 CDD PB1 256 328 - -
Viun3g04981 708 MobiDBLite consensus disorder prediction 193 233 - -
Viun3g04981 708 Pfam PB1 domain 256 329 IPR000270 GO:0005515
Viun3g04981 708 ProSiteProfiles TPR repeat profile. 110 143 IPR019734 GO:0005515
Viun3g04981 708 SMART tpr_5 110 143 IPR019734 GO:0005515
Viun3g04981 708 SMART tpr_5 36 69 IPR019734 GO:0005515
Viun3g04981 708 SMART tpr_5 74 109 IPR019734 GO:0005515
Viun3g04981 708 MobiDBLite consensus disorder prediction 1 21 - -
Viun3g04981 708 SMART PB1_new 254 331 IPR000270 GO:0005515
Viun3g04981 708 Gene3D - 254 334 - -
Viun3g04981 708 PANTHER PROTEIN CLMP1 10 706 IPR044517 -
Viun3g04981 708 SUPERFAMILY TPR-like 36 149 IPR011990 GO:0005515
Viun3g04981 708 ProSiteProfiles PB1 domain profile. 254 331 IPR000270 GO:0005515
Viun3g04981 708 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04981 Viun-Chr3 56748670 56753098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04981 19 143 Calmodulin-binding Proteins AT3G25230 29.496 8.65e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04981 K26538 - gmx:100778972 1162.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04981 3 56748670 56753098 Viun3g04981 3 56748670 56753098 ECH