Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04938 ATGTCAACAAACCACCTCAGGAATGGATATGGAGATTCTGAACCTCTCCTTCGTCAAGCTCTACTGTCTTCTTCACAGAGATCCATTGTCAACTCAACATCGCAGGTTGCTATTGTCGGCGTCAATGTCAGCCCAATTGAGAGTCTCGATTATGAAATTTTTGAGAACGAGTTCTTCAAGCAGGATTGGAGGAGCAGAGGGAAGACTCAGATATTTCAGTACATTTTTATGAAGTGGCTCTTGTGCCTTATCGTTGGCGTGATCGTTAGCCTTATTGGCTTCTGCAACAATCTCGCGGTGGAGAATCTCGCTGGCATCAAGTTTGTGGTCACCTCTAATATGATGTTGGAGAAGAGGTTTCAGTTGGCCTTCTTCATATTTTTTGTTTCTAATTTGGGTCTCACGCTTTTTGCCTCCTTAATTACGGCTTTGATAGCACCTGCGGCCACAGGTTCGGGTATACCTGAGGTGAAGGCTTACCTAAATGGGGTGGATGCACCTGGAATATTTACTGTGCAAACTCTTTTTGTTAAGATTATTGGAAGCATTACAGCAGTTTCTTCATCACTTCTTATTGGGAAGGCAGGGCCTATGGTGCATACAGGTGCATGTGTAGCAGCATTAGTAGGTCAGGGTGGGTCAAAGAGATATGGGTTATCGTGGAAATGGTTACAGTTTTTTAAGAATGACCGTGATCGGAGAGATCTAATAACATGTGGATCAGCGGCTGGAATGGCTGCTGCTTTCCGCTCCCCTGTTGGTGGTGTGTTGTTTGCTCTAGAAGAGATGGCATCTTGGTGGAGAAGTGCCCTTCTGTGGAGAGCTTTCTTCACAGCTGCAATAGTTGCAATATTGCTCCGTGCCATGATTGACCTATGTTTAAGTGGTAAATGTGGGCTATTTGGTAAAGGGGGACTGATAATGTTTGATGTTTATTCAGCGAGTATTTCATATCATTTGGTGGATGTTCCTCCAGTGTTTATTCTTGGTGTTATAGGGGGGTTACTTGGAAGCTTATTTAATTTGCTGCTGAGCAAAGTTCTTCGGATATACAATTTTATCAATGAGAAAGGAACCATTTTTAAAATTTTGCTTGCTTGTGTGATCTCCGTTTGTACATCCTGCCTTCTTTTTGGTTTGCCATGGTTTACATCTTGCCGACCTTGTCCACCTAATCCGACTGAACCGTGTCCTACAATCGGCCGGTCTGGTATCTACAAGAAGTTCCAGTGCGCTCCTAATCATTACAATGATCTTGCAAGCCTCATTTTCAACACAAACGATGATGCTATTAGAAATCTATTTAGCAAGAACACCGATGATGAGTTTGAGGTTACATCAATGCTAATCTTTTTTGTTACATGTTTTCTGTTAAGTATCTTCAGCTATGGAGTTGTTGCTCCCGCTGGTCTTTTTGTGCCAGTTATTGTTACTGGTGCTTCTTATGGACGCATTGTTGGAATGCTGCTTGGCAAAAACTCGAATCTTAACCATGGTCTTTATGCTGTACTCGGTGCTGCTTCTTTTCTTGGTGGATCCATGAGGACGACAGTTTCTCTGTGTGTAATTATTCTAGAACTCACCAACAACCTCTTGTTGCTACCCTTAATCATGATGGTGTTATTCATATCTAAGACTGTCGCAGATGCTTTCAACGCAAATATATATGACATTATAATGAAAGCCAAAGGTTTGCCATATTTAGAAACTCATGCTGAACCTTATATGAGGCAGCTAACAGTAGGTGATGTAGTAACAGGTCCACTGCAGACATTTAATGGCATCGAAAAGGTTCGTAACATCGTGTTTATTCTCAAAAGTACAGGACATAACGGGTTTCCTGTTATTGACGAGCCTCCTATGTCGGAAGCTCCGGTGTTATTTGGCATAATCCTCCGCGACCATCTTCTCACATTGCTGAAGAAGAAAGCTTTCATTTCCTCGCCTTCGGCAACCAGTGGAGCCGTCTTTGATAATTTTGCAGCCAATGATTTTGCAAAGAAGGGTTCAAGCAAGGTTCGTCTAAAGATAGAGGATATAGAGTTGTTGGAGGAAGAGATGGACATGTTCATAGATCTACATCCATTTACTAACACTTCTCCTTATACTGTTGTGGAGACAATGTCACTGGGAAAGGCCCTTACACTTTTTCGGGCGCTTGGTTTAAGGCATTTGCTTGTGATACCCAAGATTTCTAGTAGATCACCTGTGGTTGGTATACTCACACGGCACGACTTCATTCCGGAACATATTTTGGGTTTGCATCCCTTTCTGGTAAGAAAGGCAGGGAAAATACTAAGATTTTAG 2307 0.4239 MSTNHLRNGYGDSEPLLRQALLSSSQRSIVNSTSQVAIVGVNVSPIESLDYEIFENEFFKQDWRSRGKTQIFQYIFMKWLLCLIVGVIVSLIGFCNNLAVENLAGIKFVVTSNMMLEKRFQLAFFIFFVSNLGLTLFASLITALIAPAATGSGIPEVKAYLNGVDAPGIFTVQTLFVKIIGSITAVSSSLLIGKAGPMVHTGACVAALVGQGGSKRYGLSWKWLQFFKNDRDRRDLITCGSAAGMAAAFRSPVGGVLFALEEMASWWRSALLWRAFFTAAIVAILLRAMIDLCLSGKCGLFGKGGLIMFDVYSASISYHLVDVPPVFILGVIGGLLGSLFNLLLSKVLRIYNFINEKGTIFKILLACVISVCTSCLLFGLPWFTSCRPCPPNPTEPCPTIGRSGIYKKFQCAPNHYNDLASLIFNTNDDAIRNLFSKNTDDEFEVTSMLIFFVTCFLLSIFSYGVVAPAGLFVPVIVTGASYGRIVGMLLGKNSNLNHGLYAVLGAASFLGGSMRTTVSLCVIILELTNNLLLLPLIMMVLFISKTVADAFNANIYDIIMKAKGLPYLETHAEPYMRQLTVGDVVTGPLQTFNGIEKVRNIVFILKSTGHNGFPVIDEPPMSEAPVLFGIILRDHLLTLLKKKAFISSPSATSGAVFDNFAANDFAKKGSSKVRLKIEDIELLEEEMDMFIDLHPFTNTSPYTVVETMSLGKALTLFRALGLRHLLVIPKISSRSPVVGILTRHDFIPEHILGLHPFLVRKAGKILRF 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04938 768 CDD CBS_pair_voltage-gated_CLC_euk_bac 571 749 - -
Viun3g04938 768 SUPERFAMILY CBS-domain pair 571 747 IPR046342 -
Viun3g04938 768 FunFam Chloride channel ClC3 70 387 - -
Viun3g04938 768 SMART cbs_1 700 751 IPR000644 -
Viun3g04938 768 SMART cbs_1 588 641 IPR000644 -
Viun3g04938 768 Pfam Voltage gated chloride channel 135 549 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Viun3g04938 768 SUPERFAMILY Clc chloride channel 56 570 IPR014743 -
Viun3g04938 768 ProSiteProfiles CBS domain profile. 697 757 IPR000644 -
Viun3g04938 768 PRINTS Chloride channel signature 499 515 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Viun3g04938 768 PRINTS Chloride channel signature 242 261 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Viun3g04938 768 PRINTS Chloride channel signature 517 536 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Viun3g04938 768 PRINTS Chloride channel signature 147 164 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Viun3g04938 768 PRINTS Chloride channel signature 178 197 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Viun3g04938 768 PRINTS Chloride channel signature 467 487 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Viun3g04938 768 PRINTS Chloride channel signature 555 569 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Viun3g04938 768 Gene3D - 569 749 IPR046342 -
Viun3g04938 768 Gene3D Clc chloride channel 70 568 - -
Viun3g04938 768 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 23 753 - -
Viun3g04938 768 PRINTS Plant CLC chloride channel signature 277 287 IPR002251 GO:0005247|GO:0006821|GO:0016020
Viun3g04938 768 PRINTS Plant CLC chloride channel signature 263 271 IPR002251 GO:0005247|GO:0006821|GO:0016020
Viun3g04938 768 PRINTS Plant CLC chloride channel signature 419 435 IPR002251 GO:0005247|GO:0006821|GO:0016020
Viun3g04938 768 PRINTS Plant CLC chloride channel signature 52 60 IPR002251 GO:0005247|GO:0006821|GO:0016020
Viun3g04938 768 PRINTS Plant CLC chloride channel signature 295 302 IPR002251 GO:0005247|GO:0006821|GO:0016020
Viun3g04938 768 Pfam CBS domain 698 747 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04938 Viun-Chr3 56445378 56449954 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04938 25 767 Ion Channels AT5G33280 74.832 0.0 1115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04938 K05016 - gmx:100817901 1267.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04938 3 56445378 56449954 Viun3g04938 3 56445378 56449954 ECH