Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04937 ATGGCTATGTCTGCGTTATTCTTGGTTCTGCTGCTGCAACTGTCAACAATTTTTGGCTCGGAGGTTGTCTTACAGTCAAAGGATTGTGGCACTGATTGGGTGGCACATTCATATTCTAGTCATAGTCAGGAACTTTTCTACATAAACGGCAATGTAGTGGACAAGGTTGCTTTCTGTGAGGCTCTCCAATCGTATACTGAAAAGGGGTGTGATGTGAAGGACTACTTTGGAAGTGTCAAATGTGTGACGGATGTTTCTTTTGTGGATTTTCCTTTAAAGGCAGGGAGGAAACTTCTGAAAGAGGATTCAAATACCGAATCTAAACCGCAAGGAGATTCTAAGCCTCTGCCAGCCCACGTGGTTGGTATTTCTGCCGGGGGAGCTCTGTTTGCATGTTGTCTTGTTCTTTGTCCTTGTTTCTTTAAGAGAAGGAAAGCAACTTCTCATGCTGTTCTGAACAAGGACCCCAGTTCAATGGATTCAGTTTCCTCCTTTGAAGCCTCCGTTACTGACAAGATTCCAGCCAGTCCACTGCGGGTGCCCGCTAGTCCATCAAGATTCTCAATGAATCCAAAACTCAGTAGACTTCAATCATTGCATCTCGATTTGAACCAAGTTACAAGAGCTACTAATAACTTCTCAGAAACATTGCAAATAGGAGAAGGGGGTTTTGGAACTGTCTACAAGGCCAAGTTGGAAGATGGTCTGGTCGTGGCTGTAAAACGTGCAAAAAAGGAACATTTTGATAGTTTGAGAGCAGAATTCAGCAGTGAAGTTCAACTTCTGGCCAAAATTGATCACCGAAACCTGGTGAAGCTACTAGGTTATATTGACAAAGGAAATGAACGCCTCCTTATTACAGAATTTGTGCCAAATGGTACCCTTAGAGAACATTTGGATGGCATGCGTGGAAAAGCACTAGACTTCAATCAGCGCCTTGAAATTGCAATTGATGTTGCTCATGGCTTGACCTATCTACATCTGTATGCAGAAAAGCAAATTATCCATCGAGACGTGAAATCATCCAACATTCTTCTGACAGAAAGCATGCGAGCTAAAGTTGCTGATTTTGGATTTGCAAAGCTAGGGCCTGTAAACACTGACGAGACACACATTTCTACCAAAGTGAAGGGAACAGTTGGTTATTTGGATCCTGAGTATATGAAAACATACCAACTCACTCCCAGGAGTGACGTTTATTCGTTTGGAATTTTGCTTTTAGAAATCGTGTCTGGCCGCCGTCCCGTGGAGTTGAAGAAAACTGTTGAAGAGCGTGTTACACTTAGATGGGCCTTCAGGAAGTACAACGAAGGAAGTGTAGTGGAACTGGTGGATCCTTTAATGGAAGAAGCAGTAAACACAGGTGTTCTGATGAAGATGTTTGATTTGGCATTTCAATGTGCCGCACCCATTCGAGCAGATAGACCTGACATGAAATCGGTGAGCGAGCAATTGTGGGCAATAAGGGCAGATTACCTCAAGAGTGCAAGGAGAAAATAA 1500 0.4327 MAMSALFLVLLLQLSTIFGSEVVLQSKDCGTDWVAHSYSSHSQELFYINGNVVDKVAFCEALQSYTEKGCDVKDYFGSVKCVTDVSFVDFPLKAGRKLLKEDSNTESKPQGDSKPLPAHVVGISAGGALFACCLVLCPCFFKRRKATSHAVLNKDPSSMDSVSSFEASVTDKIPASPLRVPASPSRFSMNPKLSRLQSLHLDLNQVTRATNNFSETLQIGEGGFGTVYKAKLEDGLVVAVKRAKKEHFDSLRAEFSSEVQLLAKIDHRNLVKLLGYIDKGNERLLITEFVPNGTLREHLDGMRGKALDFNQRLEIAIDVAHGLTYLHLYAEKQIIHRDVKSSNILLTESMRAKVADFGFAKLGPVNTDETHISTKVKGTVGYLDPEYMKTYQLTPRSDVYSFGILLLEIVSGRRPVELKKTVEERVTLRWAFRKYNEGSVVELVDPLMEEAVNTGVLMKMFDLAFQCAAPIRADRPDMKSVSEQLWAIRADYLKSARRK 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04937 499 Gene3D Phosphorylase Kinase; domain 1 182 289 - -
Viun3g04937 499 SUPERFAMILY Protein kinase-like (PK-like) 196 488 IPR011009 -
Viun3g04937 499 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 100 490 - -
Viun3g04937 499 SMART serkin_6 213 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04937 499 CDD STKc_IRAK 219 485 - -
Viun3g04937 499 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 290 499 - -
Viun3g04937 499 Pfam Protein tyrosine and serine/threonine kinase 218 485 IPR001245 GO:0004672|GO:0006468
Viun3g04937 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 334 346 IPR008271 GO:0004672|GO:0006468
Viun3g04937 499 ProSitePatterns Protein kinases ATP-binding region signature. 219 245 IPR017441 GO:0005524
Viun3g04937 499 Gene3D Transferase(Phosphotransferase) domain 1 290 498 - -
Viun3g04937 499 ProSiteProfiles Protein kinase domain profile. 213 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04937 499 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 185 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04937 Viun-Chr3 56437668 56445006 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04937 198 488 Receptor kinase-like Gene Family AT5G59700 45.361 6.82e-74 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Viun3g04937 PK_Tyr_Ser-Thr 1.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04937 - - gmx:100798260 866.685