Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04891 ATGAAAGTTGTGAGCATGGAGACAGAGAAGAAGTGCGGTTGCTGGGCTGTCCTTAAACGCGGAGTTAGAGCAACCGAGACAAGATACCTGAATGCTAGCAATCGAGAACTTTGTCCTCCCATTGAAGCTCGATTATCTTCTGACAACCCTGATCCCCCACCCCAGGAGAACAAGGCTGCATGCCAGCTCCTTCAATTTTCATTTCAAGAACTTAAAGCTGCAACTGGAAATTTCAGACCTGATAGCATTCTCGGGGAAGGTGGCTTTGGTTATGTTTTCAAAGGATGGATTGAGGAAGATGGAACCTCGCCAGCTAAACCTGGGTCAGGGATTACAGTGGCTGTCAAAAGCTTGAAGCCAGATGGCCTTCAGGGCCATAGAGAATGGGTGGCTGAAGTTGACTTTCTTGGACAGCTTCACCATCCTAACCTTGTGAAACTTATCGGTTACTGCATTGAAGATGATCAACGGCTTCTTGTTTATGAGTTTATGACCCGTGGAAGTCTAGAAAATCATCTATTCAGAAGAACCGTACCTCTCCCGTGGCCCAACAGGGTTAAGATTGCCCTTGGTGCAGCAAAAGGATTGGCCTTCCTCCACAATGGTCCAGAACCTGTCATTTATAGAGATTTTAAAACATCTAATATTTTGCTTGATACGGAGTATAATGCAAAGCTTTCAGATTTTGGTCTAGCAAAAGCAGGACCTCAAGGAGACAAAACTCATGTTTCAACCAGAGTAGTTGGAACTTATGGTTATGCTGCTCCAGAATATGTGATGACAGGGCACTTGACTGCTAAAAGTGATGTTTATAGCTTTGGAGTTGTGTTACTTGAGATACTAACAGGAAGAAGATCAATGGACAAGAAGCGTCCGAGTGGGGAGCAAAATCTTGTTTCTTGGGCTAGGCCATACTTAGCTGACAAGCGAAAGCTGTACCAGCTTGTGGATCCTCGTCTGGAGCTAAATTATTCTCTAAAAGGAGTGCAGAAGATTTCCCAGCTAGCTTATAGTTGCCTCAGCAGAGACCCTAAATCTCGCCCCAACATGGATGAAGTTGTGAAAGCGCTGACTCCATTGCAGGAGCTTAATGACCTTGCAATTTTGTCTTATCACTCTCGCTTGTCTCAACAAGGGAGACGGAAGAAGAAAGATGGGACTCCACACATCACATACACACAATCCAAGAGCATGAGGGCCTCTCCTTTGAACACCAGCAAGCAGCATCGATGA 1233 0.4526 MKVVSMETEKKCGCWAVLKRGVRATETRYLNASNRELCPPIEARLSSDNPDPPPQENKAACQLLQFSFQELKAATGNFRPDSILGEGGFGYVFKGWIEEDGTSPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTVPLPWPNRVKIALGAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTAKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLADKRKLYQLVDPRLELNYSLKGVQKISQLAYSCLSRDPKSRPNMDEVVKALTPLQELNDLAILSYHSRLSQQGRRKKKDGTPHITYTQSKSMRASPLNTSKQHR 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04891 410 ProSiteProfiles Protein kinase domain profile. 78 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04891 410 ProSitePatterns Protein kinases ATP-binding region signature. 84 116 IPR017441 GO:0005524
Viun3g04891 410 FunFam Serine/threonine-protein kinase BIK1 46 163 - -
Viun3g04891 410 Pfam Protein tyrosine and serine/threonine kinase 82 357 IPR001245 GO:0004672|GO:0006468
Viun3g04891 410 MobiDBLite consensus disorder prediction 374 410 - -
Viun3g04891 410 Gene3D Phosphorylase Kinase; domain 1 54 163 - -
Viun3g04891 410 SUPERFAMILY Protein kinase-like (PK-like) 62 362 IPR011009 -
Viun3g04891 410 PANTHER OS01G0588500 PROTEIN-RELATED 59 361 - -
Viun3g04891 410 Gene3D Transferase(Phosphotransferase) domain 1 164 375 - -
Viun3g04891 410 CDD STKc_IRAK 84 360 - -
Viun3g04891 410 FunFam Probable serine/threonine-protein kinase PBL8 164 377 - -
Viun3g04891 410 MobiDBLite consensus disorder prediction 390 410 - -
Viun3g04891 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04891 Viun-Chr3 56151736 56155299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04891 57 372 Glycoside Hydrolase AT3G07070 54.062 4.25e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun3g04891 PK_Tyr_Ser-Thr 3.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04891 - - gmx:100305441 795.423