Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04888 ATGGAGCTTCAACTTGGTCTTGCTCTCTCAACCCATCAATCTCAATCTCAACCACTTGACCTCAATTCTCATGCCTATGACCCTATCTTCCCTTTCCATCAAAATAAAAAACGTACCCTCTCTCAGATCTTTGATCATGCACCACAAACCCCTCACACCGACCTTGTACTTCCAACGTTGTCTCTCCTTCCTTTGACGCCAACCCACCATCAAGATGATCATGATCACCACAGCCAATGTTCTAGCATCACCAAGAAGGACGAGGAGGATGCAGATGATGTAGTGGGTTGGCCACCGGTAAACTATCGGAGGAAGAAACTCCGTGTCGATAACTGTGGAGATCACGACGAGGTTGCAGGAAGAAACAATCACGTGATATGGGTTGACCATGGTTGTTCCACCACCTCAAATTCTCAGTACGTGAAGGTGAAGATGGAGGGTGTGGGAATCGCGCGGAAGGTCGATCTTGGCATGCACCGATCCTTTCACACGCTGATGGAAACCTTAATGGACATGTTTGGAACATGTCATCAAGAATCAAACGGCTATGAATTGGCTTATCAGGATAAAGAAGGTGACTGGCTTCTGGCACAAGATGTACCTTGGAGGAGTTTTGTTGGGTGTGCGCGACGACTGAAATTGGTGAAGAACAGCAGTAGATGA 663 0.4721 MELQLGLALSTHQSQSQPLDLNSHAYDPIFPFHQNKKRTLSQIFDHAPQTPHTDLVLPTLSLLPLTPTHHQDDHDHHSQCSSITKKDEEDADDVVGWPPVNYRRKKLRVDNCGDHDEVAGRNNHVIWVDHGCSTTSNSQYVKVKMEGVGIARKVDLGMHRSFHTLMETLMDMFGTCHQESNGYELAYQDKEGDWLLAQDVPWRSFVGCARRLKLVKNSSR 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04888 220 Gene3D - 133 220 - -
Viun3g04888 220 MobiDBLite consensus disorder prediction 68 93 - -
Viun3g04888 220 ProSiteProfiles PB1 domain profile. 138 220 IPR000270 GO:0005515
Viun3g04888 220 MobiDBLite consensus disorder prediction 67 95 - -
Viun3g04888 220 Pfam AUX/IAA family 180 218 IPR033389 -
Viun3g04888 220 Pfam AUX/IAA family 3 176 IPR033389 -
Viun3g04888 220 SUPERFAMILY CAD & PB1 domains 134 214 - -
Viun3g04888 220 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 219 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04888 Viun-Chr3 56076355 56077964 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04888 114 215 B3 DNA Binding Superfamily AT1G19850 31.132 2.61e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Viun3g04888 AUX_IAA 2.1e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04888 K14484 - gmx:100808466 232.646
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04888 3 56076355 56077964 Viun3g04888 3 56076355 56077964 ECH