Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04868 ATGACAAGCTGCGGCATCGATGTTGCGCCTGAGCAGCTCTGTTACATCCCCTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGCAGCCTGTTTGACATTGTGACCGTTCGATGCGGGCACTGCACCAATCTATGGTCCGTGAACATGGCCGCCGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGGGACCCGGGCACTGCAACCCAGAGTACAGGATCGACACTGGCTCCACCTCCAAATGCAACAACAGGATTGCAATGCGTCCACCCACCACTAATGTAACTGAGGAAAGGGTTGTGAATAGGCCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAATCAGTTTATAAAGGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGAAGCTTTCAGTACAGCTGCGAAAAACTGGGCACATTTTCCCCATATTCACTTCGGGCTCATGCTGGACAGCAACAACCAGGCTAAGATGGAAAATGTTTCTGAGAAGCATTTAATGTCGAGGGCTGCGCTAATGAATAAATGA 561 0.4902 MTSCGIDVAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQGPGHCNPEYRIDTGSTSKCNNRIAMRPPTTNVTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLDSNNQAKMENVSEKHLMSRAALMNK 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04868 186 CDD HMG-box_SF 113 149 - -
Viun3g04868 186 Gene3D High mobility group box domain 97 178 IPR036910 -
Viun3g04868 186 SUPERFAMILY HMG-box 103 152 IPR036910 -
Viun3g04868 186 FunFam Axial regulator YABBY 104 176 - -
Viun3g04868 186 PANTHER PROTEIN YABBY 6-RELATED 9 169 IPR006780 GO:0007275
Viun3g04868 186 Pfam YABBY protein 9 159 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04868 Viun-Chr3 55899497 55903091 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04868 8 169 C2C2-YABBY Transcription Factor Family AT2G26580 77.160 2.28e-91 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Viun3g04868 YABBY 3.3e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04868 K25796 - gmx:100804731 376.711