Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04865 ATGAATGAACGTCGAAAGAACATGAAGGTGAGGAGAAAGATCGGGAAGTATGAGATGGGGCGAACTATTGGCGAAGGCACCTTCGCCAAGGTCAAGTTCGCCAGAAATTCCGAAACAGGGGAGAGCGTGGCCATTAAAATTATGGCTAAGGCCACCATTCTCGAGCACAGAATGGTTGAGCAGATTAAAAGAGAGATATCCATTATGAAGATTGTCAGGCATCCTAATATAGTTATACTGCACGAGGTTTTGGCTAGCCAGACCAAGATCTACATAATCCTAGAATTTGTGATGGGAGGGGAACTATATGACAAAATTGTTCAGCAGGGAAGGCTTTCTGAAAATGAATCTAGGCGCTATTTTCAACAACTTATAGACGCTGTTGATCATTGCCATAAAAAGGGTGTGTACCATAGAGACTTGAAGCCTGAAAACCTCCTTCTTGATGCTTTTGGAAATTTGAAAGTTTCCGACTTTGGATTGAGTGCATTGACTAAAAAGGGTGTTGGCCTTCTTCACACCACTTGTGGGACCCCAAATTATGTTGCCCCTGAGGTGCTCGGTAATCGAGGATATAATGGTGCTGCAGCTGACGTTTGGTCATGTGGGGTCATCCTATATGTTCTAATGGCCGGATATCTTCCTTTTGAGGAGCCTGACCTTCCAACTCTGTACAGAAGGATCAATGCTGCAGAGTATGTCTGCCCATTCTGGTTTTCTGCTAAGGCAAAGTCATTCATACGTAAAATTCTAGATCCTAATCCAGAAACAAGGGTCAAAATTGAAGAAATAAGGAAAGATCCATGGTTCCAGGAAAACTATTTTCCTGTCAAACTCGGGGAATGTGAGCAAGTGAATTTGGATGATGTTCGGGCTGTTTTTGATGATATTGAGGACCAATATGTTGCTGAACAGTCAGAAATTACCGAAGGAGGTCCTTTGATAATGAATGCATTTGAGATGATTTCCTTATCACAAGGATTGAATCTTTCACCATTGTTTGATAGGCACCAGGATTATGTAAAGCGGCAAACACGATTTGTCTCCCGTAAACCAGCAAAAGTTATAATTTCTTCTGTTGAAGCTATTGCAGAGTCAATGGGTCTTAAGGTCCATTCTCGCAATTACAAGGTGAGGCTAGAAGGTGTTTCTGCAAACAAGGTTGGGCAATTTGCAGTGGTCTTGGAGGTTTTTGAAGTCGCACCATCCCTTTTCATGGTTGATATTCGAAAGGCAGCTGGGGACACTTTTGACTACCACAAGTTTTATACGAGTTTTTGTAGCAAACTCGGAAGCATTATTTGGAAACCGGCAGGGAGCATGCGAAATTCTAACACGCTTAAGCAACTGACTATATAA 1359 0.4231 MNERRKNMKVRRKIGKYEMGRTIGEGTFAKVKFARNSETGESVAIKIMAKATILEHRMVEQIKREISIMKIVRHPNIVILHEVLASQTKIYIILEFVMGGELYDKIVQQGRLSENESRRYFQQLIDAVDHCHKKGVYHRDLKPENLLLDAFGNLKVSDFGLSALTKKGVGLLHTTCGTPNYVAPEVLGNRGYNGAAADVWSCGVILYVLMAGYLPFEEPDLPTLYRRINAAEYVCPFWFSAKAKSFIRKILDPNPETRVKIEEIRKDPWFQENYFPVKLGECEQVNLDDVRAVFDDIEDQYVAEQSEITEGGPLIMNAFEMISLSQGLNLSPLFDRHQDYVKRQTRFVSRKPAKVIISSVEAIAESMGLKVHSRNYKVRLEGVSANKVGQFAVVLEVFEVAPSLFMVDIRKAAGDTFDYHKFYTSFCSKLGSIIWKPAGSMRNSNTLKQLTI 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04865 452 SMART serkin_6 17 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04865 452 Pfam NAF domain 313 372 IPR004041 GO:0007165
Viun3g04865 452 FunFam Non-specific serine/threonine protein kinase 10 311 - -
Viun3g04865 452 Pfam Protein kinase domain 17 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04865 452 SUPERFAMILY Protein kinase-like (PK-like) 14 326 IPR011009 -
Viun3g04865 452 FunFam Non-specific serine/threonine protein kinase 8 96 - -
Viun3g04865 452 Gene3D Transferase(Phosphotransferase) domain 1 7 313 - -
Viun3g04865 452 FunFam Non-specific serine/threonine protein kinase 310 436 - -
Viun3g04865 452 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 421 - -
Viun3g04865 452 CDD CIPK_C 317 430 - -
Viun3g04865 452 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165
Viun3g04865 452 Gene3D Kinase associated domain 1, KA1 314 436 - -
Viun3g04865 452 ProSiteProfiles Protein kinase domain profile. 17 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04865 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Viun3g04865 452 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04865 Viun-Chr3 55822568 55829590 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04865 9 378 CBL-interacting serine-threonine protein kinases AT5G35410 72.432 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Viun3g04865 Pkinase 2.8e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04865 - - gmx:100811380 816.994