Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04853 ATGGTACAAACAAAGAAGTTCAGAGGTGTCAGGCAGCGCCATTGGGGTTCATGGGTATCCGAAATTCGTCACCCACTTCTTAAGAGAAGGGTGTGGCTGGGGACATTTGAAACGGCGGAAGAAGCTGCCAGAGCCTATGATCAAGCTGCTATTCTGATGAGTGGGAGAAATGCCAAGACAAATTTCCCAATAACTCAAACCCCTGAAGGTGATCCAAAGAGCATTACCAGTGAGGACACCCCCTCCTCCACCTCCAAGGATCTGGAGGAAATCCTGCATGCCAAGCTTCGAAAATGTGGTAAGGTGCCTTCACCTTCTATGACCTGCTTGCGCCTTGACACAGAGAACTCCCACATCGGAGTGTGGCAAAAGCGCGCTGGGAGACGTTCGGATTCAAATTGGGTCATGACGGTTCAGCTGGGAAAGAATGGTACCAACAATGACACTCATCAAGCTGATAATTCCACCTCTCTTTCTCTACCTTCTTCCGATCATCATAACCACCACCACCACCACCGTGAGTCTCCGTCGGGTGTGACAGGTCATCACCATCGTGAAGAAGTGGTGAGGGGAGAGATCGATGAAGAAGAGAGAATCGCCCTTCAGATGATAGAGGAACTCCTCAACGACAGAAACTGCCCTAGTCCTTCATTCAGCAACATTCAAGAAAGGGATGGTGGTGATGATGACACCTTTTTTCTTTAA 705 0.4908 MVQTKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSITSEDTPSSTSKDLEEILHAKLRKCGKVPSPSMTCLRLDTENSHIGVWQKRAGRRSDSNWVMTVQLGKNGTNNDTHQADNSTSLSLPSSDHHNHHHHHRESPSGVTGHHHREEVVRGEIDEEERIALQMIEELLNDRNCPSPSFSNIQERDGGDDDTFFL 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04853 234 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Viun3g04853 234 MobiDBLite consensus disorder prediction 61 82 - -
Viun3g04853 234 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Viun3g04853 234 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Viun3g04853 234 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 161 - -
Viun3g04853 234 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Viun3g04853 234 MobiDBLite consensus disorder prediction 210 234 - -
Viun3g04853 234 MobiDBLite consensus disorder prediction 179 194 - -
Viun3g04853 234 MobiDBLite consensus disorder prediction 141 194 - -
Viun3g04853 234 MobiDBLite consensus disorder prediction 141 162 - -
Viun3g04853 234 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Viun3g04853 234 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Viun3g04853 234 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Viun3g04853 234 MobiDBLite consensus disorder prediction 61 86 - -
Viun3g04853 234 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Viun3g04853 234 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04853 Viun-Chr3 55734623 55736154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04853 1 209 AP2-EREBP Transcription Factor Family AT1G15360 60.000 3.44e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun3g04853 AP2 9.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04853 - - gmx:100787517 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04853 3 55734623 55736154 Viun9g03068 9 38356960 38358199 ECH
Viun3g04853 3 55734623 55736154 Viun3g04853 3 55734623 55736154 ECH