Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04851 ATGGACATCATTGCCGTGATAATAACTTGCCTGTTGCTCATGTCTGTGGGCACAAGAGTTGAAACGCAACAGATACCAGTCGGTGCCACACTTGCTCCACAGAGTACTACTCCATCTTTCTGGCTTTCTCCTTCTGCTCAATTTGCATTTGGTTTTTATTCACTAGAACAAGGTGGTGGGTTTGTGGTTGCAATTTGGCTGGTTAGCGGGGAGAACAAGACAGTGGTATGGACTGCACAACGGAACGATCCTCCGGTAACCTCAGGTGCAAAGCTACAACTAAACATGGATGGAAAACTAGTAATCATAGACGACCAAGGAGAAGAAAAGGTTATTGCAGCTAATTCCAGTGCAAAAGCTGTCTCTGCCTCCGTGCTCGATTCTGGAAACTTTGTGCTCTACAACAGTAAAAACGACATCATATGGCAGAGCTTCGATTACCCAACAGATACTTTGTTGGGTGGTCAATCTCTTCCAAACGGACATCAACTGGTGTGCAGTTCATCACAGAACAATCATTCCAGTGGACGGTTTCGTCTCAAGATGCAGGATGACGGAAATCTTGTTCTGTATCCAGTGGACACAACTGACACAGGAACGGATGCTTACTGGGACACTGAGACTCGTTTTGGTCTTAATCGCGATGAGGAATATCAGTACTCTCTCGACCGAAATGGTACTCTGCGGATTCTGAATGAAAGCAGCAATGGGAGGACCAAGGTGATTCTAAGTGTAGTCAGTAATTCATCTTTAGCTAATGATGGAAACCGGATCATATATCGTGCAACCCTGAATTATGATGGGATATTTCATCTGTATGCGCATTTTAAGAATGGTAGTACCCAAAATTTGAAACAATGGCCGCAGGTTAAAGACATGTGTTCAGTAAAAGGTTTTTGTGGCTTCAACAGCTACTGCACATTAGATGACGATCAACCACTATGCTCCTGTCTTTCGGGTTTTATCTCCGTACATCAAAATGACTCCACTCTGGGCTGCAAAAGGAGCTTTCTGAAAGAAGATTGTAGGGAGAAGAAAGACAGCGCAACCTCGTATGAGATGAAGTCAGAGGAGGATATTGGGTGGGTGGATGTTCCTTATTTCATGGCTGAAATGTCACAAGAAGAATGTTCCGCTGCTTGCTTGGCTGATTGCGAGTGTGAGGCTGCATTTTACGACGGTGCAAGCTGCATGAAACAAAGGCTGCCTTTGAGATATCTCACACGACAATTACGCGATTACAGAACCTCAGTGTTACTATGGAAAGTGGGAGACAGCCTCAGCAATCGGACGGAAAACGATAATCCTGTGCCTGTGCCTGAACCACCACCAATCAAGGCGACAAGTAATAAAGCAACGGTGCATATTATTGTCATTACATCCGTATTTTCTCTGCTTTTGTGTTCAACCATTGTCATATCCAGTCACTACACGTACAAGATTCGGATTTTGAAGTATAAAAGATTGATGGAAACTGGGAACCTGGGCCTGAATGAAGAGGTGACTTTGAGAAGGTTTTCATACAGCGAACTAAAAAGAGCGACAAATAATTTCAAGATAGAACTGGGAAAAGGGTCTTTCGGAGCAGTTTACAAGGGGGCGTTGGAGAAAGGTAAGAGGTTGATTGCAGTGAAGAGACTGGAGAAGTTGGTGGAAGAAGGAGAAAGGGAGTTCCAAGCAGAAATGAGAGCCATCGGAAAAACCCGTCACAGGAATCTAGTTCGTTTGTTGGGTTTCTGTGCGGAGGGTTCTAAAAGGCTTCTGGTGTATGAATACATGTCCAATGGCTCCCTTGGAAATCTTATCTTCGTGGGTAAAAATCAGAGGCGTCCAGAGTGGGATGAGAGAGTAAGAATAGCGGTGGAGATTGCGAGAGGGATAATGTATCTCCATGAAGAGTGTGAGGCTCCAATCATTCATTGTGACATAAAGCCTCAAAACATCTTGGTGGATGAGTTCTGGACAGCCAAAATATCCGATTTTGGGCTGGCGAAACTTCTCATGCCTGATCAAACCAGAACCATGACAGGGGCTAGAGGGACAAGAGGGTATGTGGCCCCTGAATGGAACAAGAATGTCCCAATATCTGTCAAGACTGATGTTTATAGCTACGGAATAATGCTGTTGGAGATTTTGTGTTGCAGAAGAAACATCGAAGTTCATGTCCCTGAACCTGAGGCGGTTAGTCTCTCCACCTGGGCTTATAACTGTTTTGTTGCAGGAAAACTCAATAAGCTTTTTCCTTGGGAAGTGGTGGATGACAAAACTGCCGTGGAAAATATCGTTAAGGTGGCACTTTGGTGTATCCAAGATGAAGCTTTTCTGCGCCCAACAATGAAGAGTGTCGTATTGATGTTAGAGGGGGTCACCGACATAGCAATTCCTCCTTGCCCCGCTTCCTATTCTACTTGA 2412 0.4465 MDIIAVIITCLLLMSVGTRVETQQIPVGATLAPQSTTPSFWLSPSAQFAFGFYSLEQGGGFVVAIWLVSGENKTVVWTAQRNDPPVTSGAKLQLNMDGKLVIIDDQGEEKVIAANSSAKAVSASVLDSGNFVLYNSKNDIIWQSFDYPTDTLLGGQSLPNGHQLVCSSSQNNHSSGRFRLKMQDDGNLVLYPVDTTDTGTDAYWDTETRFGLNRDEEYQYSLDRNGTLRILNESSNGRTKVILSVVSNSSLANDGNRIIYRATLNYDGIFHLYAHFKNGSTQNLKQWPQVKDMCSVKGFCGFNSYCTLDDDQPLCSCLSGFISVHQNDSTLGCKRSFLKEDCREKKDSATSYEMKSEEDIGWVDVPYFMAEMSQEECSAACLADCECEAAFYDGASCMKQRLPLRYLTRQLRDYRTSVLLWKVGDSLSNRTENDNPVPVPEPPPIKATSNKATVHIIVITSVFSLLLCSTIVISSHYTYKIRILKYKRLMETGNLGLNEEVTLRRFSYSELKRATNNFKIELGKGSFGAVYKGALEKGKRLIAVKRLEKLVEEGEREFQAEMRAIGKTRHRNLVRLLGFCAEGSKRLLVYEYMSNGSLGNLIFVGKNQRRPEWDERVRIAVEIARGIMYLHEECEAPIIHCDIKPQNILVDEFWTAKISDFGLAKLLMPDQTRTMTGARGTRGYVAPEWNKNVPISVKTDVYSYGIMLLEILCCRRNIEVHVPEPEAVSLSTWAYNCFVAGKLNKLFPWEVVDDKTAVENIVKVALWCIQDEAFLRPTMKSVVLMLEGVTDIAIPPCPASYST 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04851 803 Pfam Protein kinase domain 521 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04851 803 SMART serkin_6 516 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04851 803 CDD B_lectin 42 148 IPR001480 -
Viun3g04851 803 ProSiteProfiles Bulb-type lectin domain profile. 149 285 IPR001480 -
Viun3g04851 803 FunFam Serine/threonine-protein kinase 148 284 - -
Viun3g04851 803 Gene3D - 19 147 IPR036426 -
Viun3g04851 803 SMART blect_4 28 148 IPR001480 -
Viun3g04851 803 PIRSF SRK 1 803 IPR024171 GO:0004674
Viun3g04851 803 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 36 798 - -
Viun3g04851 803 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Viun3g04851 803 Coils Coil 544 564 - -
Viun3g04851 803 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 593 794 - -
Viun3g04851 803 SUPERFAMILY alpha-D-mannose-specific plant lectins 170 273 IPR036426 -
Viun3g04851 803 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 19 146 - -
Viun3g04851 803 FunFam S-receptor-like serine/threonine-protein kinase 486 592 - -
Viun3g04851 803 Gene3D - 148 281 IPR036426 -
Viun3g04851 803 ProSitePatterns Protein kinases ATP-binding region signature. 522 545 IPR017441 GO:0005524
Viun3g04851 803 Gene3D Phosphorylase Kinase; domain 1 483 592 - -
Viun3g04851 803 SUPERFAMILY Protein kinase-like (PK-like) 500 787 IPR011009 -
Viun3g04851 803 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672|GO:0006468
Viun3g04851 803 Gene3D Transferase(Phosphotransferase) domain 1 593 793 - -
Viun3g04851 803 SUPERFAMILY alpha-D-mannose-specific plant lectins 61 207 IPR036426 -
Viun3g04851 803 ProSiteProfiles Protein kinase domain profile. 516 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04851 803 Pfam S-locus glycoprotein domain 253 322 IPR000858 GO:0048544
Viun3g04851 803 CDD STKc_IRAK 522 788 - -
Viun3g04851 803 Pfam D-mannose binding lectin 74 158 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04851 Viun-Chr3 55712335 55715266 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04851 435 802 Receptor kinase-like Gene Family AT4G04510 36.939 4.45e-65 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Viun3g04851 Pkinase 4.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04851 - - gmx:100815958 1117.06