Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04850 ATGGCCTTCGAAGCCGTTGTGTTGTGGGTGTTATGCATGCTATTTGCAAAACAAGGTGAGAGCATCATAAAGCCAGGGTCTAGGCTCTATGCTACTGAAATTGGGAATAACAGTTCATGGGTATCACCTTCTGGCCACTTTGCTTTTGGCTTTTACCCACAGGGTAATGGCTTTGCTGTGGGTATATGGCTGGTTGCTGCTCCTCAGAAAACTGTAGTCTGGACTGCTAACCGTGATATCCACCCAGTCCCCTTGAATTCAACGTTGAACATCACCACCACTGGTATGCGGCTTTTCCCAAGTGGGAGAGAAAGCCTTGCTCTCATTTCAACTATTAATACAACTTCAGCATCTATGCTTGATTCTGGTAACTTTGTGCTCTATAGCAATGGCAGTACTGTTGTTTGGCAAAGCTTTGATAATCCAACTCACACCTTACTAGGAGGTCAGAATTTAACTTCCGACGCCAAACTGGTTTCCAGTGGAGCTTTCTTTATCATCATGCAAGAAGATGGAAACCTCGTTGCTTATCCAAAGGACAGCGCAGCATCTGCCTCTGATGCTTACTGGGCTTCAAACACTGCTAAAATGTTCGCAGAGCTCTGGCTTAGTGCCGCGGGCTCTCTTTGCATTGGTGAGGGGATTACCTGTTTGCACAAAAACATTAGCCCTCCAAACAAATCACACAACACAAGTTCAATCTACCGTGCAACACTTGCTGCAGACGGGAACCTCATACTGTATGAGCACCAATTTGAGAACAGTAGTAGCGAGTCTACACATGTCCGAGTACTGTGGAGTACCTCGCTTGAGAAATGTCAAATCAAGGGGTTTTGTGGGTTTAACACTTATTGCTCAAACGTAAAAGGCGATGCGGTGTGTGAGTGTTTTCCTGGCTTCGTCCCCTCCAACACCAGTGGTAACGTGTCTCGGGACTGCGTATTAGCCTATGCACAAGATGGTTGTAGAAGCAGTGAGGCCCCAAACCAAATGATTTTGTATAATATTGCTGAGTTGGAGGATGTGTATTGGATCGCTACACCATATTCTGTCGTACCGATGAAGAAGAAAGAGTGCGAAAACTCTTTACGGGATGATTGTGATTGCGTGGCAGTGTTATATTGGAAGGGAAACTGCGAAAAGTACGGACTGCCGCTAACATATGGCAGACGGCTTCAAAACTCATCTGTGGTGGCACTCTTCAAGAATGCTTCAGGAACCGTCCAAAACACAATTCCAGGAACCTTTTTTCAGAAGCCTAAATCCAAGGTGGTTACGGATAACAAGAAAAGTGTGATAATGATTCTAGCCTTTACTTTGGGTTCCATTTCATTGTTATCTTTGATATTTGCTGTGTCCATTTTCTTCACTTACAAGCGGAAGGTGCATAAGTATACAACGTTGTCTGAAAGTGATCAGAACCTGGGATTGACTGGAGAATGCTCTCTGCGTTCGTTTTCTTTCGATGAACTTGTCAAATCCACTGGAAGCTTCACGGAAGAGATAGGGAGAGGATCATTTGGAGCGGTTTACAGAGGCGAAACAGGTGACGACAACCAAAATATCGCTGTCAAGAGATTGGAGAGAGTTGCTGTTGGTGACTGGCAGAGGGAATTCCGGAATGAGATTACTTCCATTGCTCGAACACATCACAGGAATTTGGTTAAGCTGATTGGTTTTTGCATCGATGGAGCTGGGAGTCTCCTCGTTTACGAATACGTAAGAAACGGGTCTCTGGGAAGTCTTCTCTTCAATGATGAGAAACAGATATCCTGGAGAGACAGACTAAAAATCGCATTGGATGTTGCTAGAGGAATCCTTTATCTACACGATGAGTGTGAGGTCCGCATCGTCCATTGCAATATAAATCCTCGAAATATACTTATGGATGAAACGTGGACTGCAAAGATCTCTGATTTTGGATTTGCAAGACTACTGAAGTGTGAGCATTCAAGAATGAGAAAAGAGGACGATGGGACAAGCAAGTACTTGGCACCTGAATGGCAGAAGGAAGCACCGGTGTCGGTAAAATTTGACATTTACAGTTTTGGGATGGTGCTGCTGGAGATCGTGTGCCGCAGACGCAGCATAGAAATGAAAGTTTCCTCAGCAGAAGAGATACTTCTCTCCAGCTGGGTATATAAATGTTTTGCAGAAGGGCAATTAAATAGGGTTGTTAAGAAGGATGAAAGTGTGGAGTGGAAGATAATGGAAAGAATGGTGAAGGTGGGGTTGTGGTGTGTGCAAGACAATCCTTCTCTTCGTCCCTTGATAAAGAATGTCATCTTGATGTTGGAAGGATTGAAAGATATTCCAATTCCTCCCTCTCCAGCCCACCCTCATCGTTAA 2349 0.4453 MAFEAVVLWVLCMLFAKQGESIIKPGSRLYATEIGNNSSWVSPSGHFAFGFYPQGNGFAVGIWLVAAPQKTVVWTANRDIHPVPLNSTLNITTTGMRLFPSGRESLALISTINTTSASMLDSGNFVLYSNGSTVVWQSFDNPTHTLLGGQNLTSDAKLVSSGAFFIIMQEDGNLVAYPKDSAASASDAYWASNTAKMFAELWLSAAGSLCIGEGITCLHKNISPPNKSHNTSSIYRATLAADGNLILYEHQFENSSSESTHVRVLWSTSLEKCQIKGFCGFNTYCSNVKGDAVCECFPGFVPSNTSGNVSRDCVLAYAQDGCRSSEAPNQMILYNIAELEDVYWIATPYSVVPMKKKECENSLRDDCDCVAVLYWKGNCEKYGLPLTYGRRLQNSSVVALFKNASGTVQNTIPGTFFQKPKSKVVTDNKKSVIMILAFTLGSISLLSLIFAVSIFFTYKRKVHKYTTLSESDQNLGLTGECSLRSFSFDELVKSTGSFTEEIGRGSFGAVYRGETGDDNQNIAVKRLERVAVGDWQREFRNEITSIARTHHRNLVKLIGFCIDGAGSLLVYEYVRNGSLGSLLFNDEKQISWRDRLKIALDVARGILYLHDECEVRIVHCNINPRNILMDETWTAKISDFGFARLLKCEHSRMRKEDDGTSKYLAPEWQKEAPVSVKFDIYSFGMVLLEIVCRRRSIEMKVSSAEEILLSSWVYKCFAEGQLNRVVKKDESVEWKIMERMVKVGLWCVQDNPSLRPLIKNVILMLEGLKDIPIPPSPAHPHR 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04850 782 ProSiteProfiles Protein kinase domain profile. 496 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04850 782 Pfam Protein kinase domain 499 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04850 782 PIRSF SRK 1 781 IPR024171 GO:0004674
Viun3g04850 782 Gene3D Transferase(Phosphotransferase) domain 1 574 773 - -
Viun3g04850 782 Gene3D - 20 141 IPR036426 -
Viun3g04850 782 FunFam Putative receptor-like protein kinase 574 772 - -
Viun3g04850 782 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 194 IPR036426 -
Viun3g04850 782 ProSitePatterns Protein kinases ATP-binding region signature. 502 525 IPR017441 GO:0005524
Viun3g04850 782 SUPERFAMILY Protein kinase-like (PK-like) 480 766 IPR011009 -
Viun3g04850 782 ProSiteProfiles Bulb-type lectin domain profile. 25 189 IPR001480 -
Viun3g04850 782 Pfam S-locus glycoprotein domain 230 303 IPR000858 GO:0048544
Viun3g04850 782 FunFam S-receptor-like serine/threonine-protein kinase 465 573 - -
Viun3g04850 782 Gene3D - 142 276 - -
Viun3g04850 782 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 32 776 - -
Viun3g04850 782 Pfam D-mannose binding lectin 71 157 IPR001480 -
Viun3g04850 782 Gene3D Phosphorylase Kinase; domain 1 469 573 - -
Viun3g04850 782 SUPERFAMILY alpha-D-mannose-specific plant lectins 149 248 IPR036426 -
Viun3g04850 782 SMART blect_4 143 272 IPR001480 -
Viun3g04850 782 SMART blect_4 31 142 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04850 Viun-Chr3 55709349 55712015 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04850 356 777 Receptor kinase-like Gene Family AT4G18250 33.556 2.28e-62 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Viun3g04850 Pkinase 2.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04850 - - cam:101496142 853.203