Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04840 ATGCCCTGGTCTTATTCTTCCCCCTATGTGCCTCCGCAACACCACTCTAACTACATTCCACCTTCCTCCGATCATCCCGCACAAAACGGATTTCCCCGTGCTGCCGCTCCCCGTCCTCTACCCTGGCATCGCGGTGGCGCCGGCGGCCGTGCTGCCTCCGCCGGTCGTGGATTCTCTCGCCCCCGTGACCCTTCTCACCGGAACTCACGTTTCCCCGCGGAGGAACAAGAAAATGGCGACGCTATCAACTTTGACGCGTACGACTCGGTCCCCGTGGAGGCGAGTGGGAAGGACGTGCCTCCGCCGGTGAACGTCTTCGACGATACGGACTTGGACGAAGGGTTGAAGAGGAATATCAAGCGATGCAAGTACGTGAAACCCACGCCCGTTCAGCGTCACGCGATTCCCATAGCTACCGCGGGCCGCGACCTCATGGCGTGTGCACAGACCGGGTCGGGGAAAACGGCGGCGTTTTGCTTTCCCATCATATCCGGGATTTTGAAGGGTCGCTCCTCTCCTGGGTTTTCGCCTGTATCTCGTGGTGTCGCTGTTGCATACCCCACTGCGCTTATTTTGTCTCCTACAAGGGAGTTGTCTTGCCAGATACGCGATGAGGCCAACAAATTTGCATTTCAAACTGGAGTGAAGGTTGTTGTTGCCTATGGTGGGTCTCCTATAATTCAGCAGCTGCGCCTTTTGGAGAAGGGGGTTGACATATTAGTTGCCACTCCTGGGCGTTTGGTGGATATTATTGAGAGAGAAAGGGTTTCGTTGGAGAGGATTAAGTACCTTGCATTAGACGAAGCTGATCGTATGCTGGATATGGGTTTCGAGCGTCAAATACGCAAGATTGTGGAGAAAATGCACATGCCACCGCCAGGTATCAGACAGACATTGTTGTTTAGTGCAACCTTCCCTAATGATATACAGAAACTAGCTTCGGACTTTTTGTCGGACTACATATTCCTGTCTGTTGGGAGAGTAGGATCGAGCACTGAACTCATTGTGCAGAAGATTGAGCTTGTACAGGATACAGACAAAAGAGACAAACTTGTTGATCATCTTTGTGGCCAAAAGGTGCATGGGACCAATGGGAAGCATGCTTTGACTCTTGTATTTGTTGAAACAAAAAGAGGAGCAGATGCTTTAGAAAGCTGGTTATCGAAAAGTGGCTTTCCAGCTATTGCCATACACGGTGACAAAGTTCAAATGGAGAGGGAACGTGCTTTAAGATCATTTAAGTCTGGACACATTCCTATTTTGGTTGCAACCGATGTTGCTTCGAGGGGATTGGATATCCCGCATGTGGCTCATGTCATAAACTTTGACTTGCCCAGAGACATAGATGACTATGTGCACAGAATTGGACGAACAGGCCGTGCAGGCAAATCTGGTTTAGCCACTGCTTTCTTCAGCGACAAGAACAGTCCAATGGCAAAGGCTCTTGTTGGACTCTTGCAGGAGGCAAACCAAGAAGTTCCTTCTTGGCTCAGCCAGTTTGCAGAGTGTTCCTCCTCAGGTGGCCGTGGTCGTGGTTATGGATCACAGCGTTACAGCAGTGGTAGCTATGGCGGTCGTGATTTTCGAAATCCATCTGAACCTGAGGTGCAAAGCTACAACTGCTACGGTTCTCACGGCAATGCAGATAATGCTGTGGAATCTTTTAGTACAACCTCATACGTTGATACCTCGTACGACATGCAAAACTCCCTTGTAGAAACCTCTTTTGACAATTTGAATATAAGCTGCAATTATGATGAAGGTGATGTTAACTCTGTTGAACTATGTGGAGGAGGTGTTGCGGTTGGTGAAGAGGGGCCTAGTGGTTATGCATCTATTGTTCCCACTGGATGGGACTAG 1860 0.4989 MPWSYSSPYVPPQHHSNYIPPSSDHPAQNGFPRAAAPRPLPWHRGGAGGRAASAGRGFSRPRDPSHRNSRFPAEEQENGDAINFDAYDSVPVEASGKDVPPPVNVFDDTDLDEGLKRNIKRCKYVKPTPVQRHAIPIATAGRDLMACAQTGSGKTAAFCFPIISGILKGRSSPGFSPVSRGVAVAYPTALILSPTRELSCQIRDEANKFAFQTGVKVVVAYGGSPIIQQLRLLEKGVDILVATPGRLVDIIERERVSLERIKYLALDEADRMLDMGFERQIRKIVEKMHMPPPGIRQTLLFSATFPNDIQKLASDFLSDYIFLSVGRVGSSTELIVQKIELVQDTDKRDKLVDHLCGQKVHGTNGKHALTLVFVETKRGADALESWLSKSGFPAIAIHGDKVQMERERALRSFKSGHIPILVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGKSGLATAFFSDKNSPMAKALVGLLQEANQEVPSWLSQFAECSSSGGRGRGYGSQRYSSGSYGGRDFRNPSEPEVQSYNCYGSHGNADNAVESFSTTSYVDTSYDMQNSLVETSFDNLNISCNYDEGDVNSVELCGGGVAVGEEGPSGYASIVPTGWD 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04840 619 Pfam DEAD/DEAH box helicase 128 312 IPR011545 GO:0003676|GO:0005524
Viun3g04840 619 Pfam Helicase conserved C-terminal domain 365 462 IPR001650 -
Viun3g04840 619 MobiDBLite consensus disorder prediction 1 81 - -
Viun3g04840 619 CDD SF2_C_DEAD 335 471 - -
Viun3g04840 619 Gene3D - 61 325 IPR027417 -
Viun3g04840 619 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 347 501 IPR001650 -
Viun3g04840 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 480 IPR027417 -
Viun3g04840 619 CDD DEADc_DDX3_DDX4 106 329 IPR044763 GO:0003724|GO:0005524
Viun3g04840 619 MobiDBLite consensus disorder prediction 1 24 - -
Viun3g04840 619 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 104 132 IPR014014 GO:0003724
Viun3g04840 619 FunFam Probable ATP-dependent RNA helicase DDX4 67 325 - -
Viun3g04840 619 Gene3D - 326 504 IPR027417 -
Viun3g04840 619 FunFam ATP-dependent RNA helicase RhlB 326 505 - -
Viun3g04840 619 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 79 501 - -
Viun3g04840 619 SMART ultradead3 123 338 IPR014001 -
Viun3g04840 619 SMART helicmild6 381 462 IPR001650 -
Viun3g04840 619 MobiDBLite consensus disorder prediction 60 74 - -
Viun3g04840 619 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 135 323 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04840 Viun-Chr3 55614417 55617432 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04840 63 495 Eukaryotic Initiation Factors Gene Family AT1G72730 31.336 8.63e-60 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04840 K11594 - gmx:100791226 893.649