Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04827 ATGAGTTTCTCTGACCACATTCCATCCTTTATGATGTCACCGCCGTCATTTTCGACAGACACAGATGCCATTGAAGTGAGGCTTCAATTTCCAATGAACAACGATTTATTGGAGCCACATTCACCACAGGATCAACCCCCTTCTTTCAAGAGGGCAAGAATCGGTGATAACAACCACTCCTATCCAATGGCATGCCCTCCAAGGATGATTCAAAACCCCAATTTTAATAAGGGAACCAGCCACATTTTCTTCAAGACTCGCATGTGTGCAAAATTCAGAGTTGGGGCTTGTAGGAACGGTGAGAATTGCAACTTTGCACATGGAGTTGAGGACATGAGGCAGCCACCCCCGAACTGGCAAGAGCTTGTTGGATTGCGCAATGAGGAGCGGCTGCCCTCCGGAAATTGGGATGATGACCAGAAAATTATACAGAAGATGAAGCTGTGCAAGAAGTATTATAATGGGGAGGAATGCCCCTATGGTGATAAGTGTAGTTTTCTTCATGAAGACCCTGCCAAGTTTAGGGATGATTCGGGGAGGTACAGAGAGAGCACAGCAATAAACATCGGAACTAATGGATCTCCCAAGGCACATGGTGATCCTTCAAATTGTTTAGAGAGTAATAAGGTTGTCAACACTGGCTTAAATGTTTGCCGGTCGAATGCTAAGTCCACTTATTGGAAGACTAAACTGTGCATCAAATTTGAGACAACAGGCCACTGCCCCTTTGGGGATGACTGTCACTATGCTCATGGGCAAGCAGAACTACAATTTCCTGGTGGACGCAATGAGGCAGAAACAGCAGGTGCCGCTCCTATTTCAGCTAAAGCTACCATTCCAACCTTACCAAGAGCTGCACCAGTTCCTTTTAATGATGCTCCTCCAAGCCAGAGAGCAAGTGTACCTCCTGCAAATGAAGAGGAGCAGGGCAAGAAGCATTTACTGAAGTGGAAGGGACCCAAGAAAATCAACCGAATTTATGGTGATTGGCTTGACGATTTACCGCTCGCTCACAACTTGCCAGGTAGAGTTGGAATCTGA 1041 0.4621 MSFSDHIPSFMMSPPSFSTDTDAIEVRLQFPMNNDLLEPHSPQDQPPSFKRARIGDNNHSYPMACPPRMIQNPNFNKGTSHIFFKTRMCAKFRVGACRNGENCNFAHGVEDMRQPPPNWQELVGLRNEERLPSGNWDDDQKIIQKMKLCKKYYNGEECPYGDKCSFLHEDPAKFRDDSGRYRESTAINIGTNGSPKAHGDPSNCLESNKVVNTGLNVCRSNAKSTYWKTKLCIKFETTGHCPFGDDCHYAHGQAELQFPGGRNEAETAGAAPISAKATIPTLPRAAPVPFNDAPPSQRASVPPANEEEQGKKHLLKWKGPKKINRIYGDWLDDLPLAHNLPGRVGI 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04827 346 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 144 168 IPR000571 GO:0046872
Viun3g04827 346 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 227 253 IPR000571 GO:0046872
Viun3g04827 346 SUPERFAMILY CCCH zinc finger 81 114 IPR036855 GO:0046872
Viun3g04827 346 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Viun3g04827 346 SUPERFAMILY CCCH zinc finger 143 170 IPR036855 GO:0046872
Viun3g04827 346 SUPERFAMILY CCCH zinc finger 225 257 IPR036855 GO:0046872
Viun3g04827 346 Pfam CCCH-type zinc finger 87 108 IPR041367 -
Viun3g04827 346 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Viun3g04827 346 Gene3D - 77 114 - -
Viun3g04827 346 Gene3D - 143 172 - -
Viun3g04827 346 Gene3D - 219 258 - -
Viun3g04827 346 FunFam Zinc finger CCCH domain-containing protein 221 258 - -
Viun3g04827 346 MobiDBLite consensus disorder prediction 286 311 - -
Viun3g04827 346 PANTHER CCCH ZINC FINGER/TIS11-RELATED 43 175 IPR045877 GO:0003729
Viun3g04827 346 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Viun3g04827 346 SMART c3hfinal6 226 253 IPR000571 GO:0046872
Viun3g04827 346 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Viun3g04827 346 ProSiteProfiles Zinc finger C3H1-type profile. 226 254 IPR000571 GO:0046872
Viun3g04827 346 FunFam Zinc finger CCCH domain-containing protein 39 140 172 - -
Viun3g04827 346 FunFam Zinc finger CCCH domain-containing protein 78 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04827 Viun-Chr3 55532841 55535648 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun3g04827 zf-CCCH 3.6e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04827 - - gmx:100793865 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04827 3 55532841 55535648 Viun3g04827 3 55532841 55535648 ECH