Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04797 ATGTTGGGCTGCGGCCAAGAAGAGATTGAACTGTCACGGGATGGCAGCCACTACAGTCTCTCCACCGGAATACTTCCGTCTCTCGGAGCCAAAAGCAACCGCAGAATCAAGCTGCGCCGCTTTATTCTATCGCCCTACGACCGCCGTTACAGGATATGGGAAACTTTCCTTATTATTCTGGTATTTTATACTGCCTGGGTTTCTCCCTTCGAATTCGGATTCTTGAAGAAGCCAGAACCACCGCTTTCCATTACGGACAATATTGTGAATGGATTTTTTTTCGTGGATATAGTTCTGACCTTCTTTGTGGCTTACATTGACAAAAGCACCTATTTGATCGTGGATGATCGGAAACAGATTGCTTGGAAATATGGAAGGACTTGGCTGGCCTTCGATGTTATCTCCATCATTCCTTCAGAGCTTATACAAAAGATATCACCTTCTCCTCTTCAATCTTACGGTTTATTCAACATGCTTCGCCTATGGCGTCTTCGGAGAGTCAGTGCTTTGTTTTCTCGGCTTGAGAAGGACAGAAACTATAACTATTTTTGGGTTCGGTGTGCCAAGCTTATTTCTGTTACCCTCTTCGCTGTTCATTGTGCTGGGTGTTTCTATTATCTTATTGCTGCACGTTATCATGATCCAAAGAAGACGTGGATTGGTTCAACGATGGATAATTTCCTTCAACACAGCTTGTGGTCAAGATACGTGATGTCTATTTACTGGTCTATTACTACCTTAACAACTGTCGGTTATGGAGATTTGCATCCAGTGAATTCAAGGGAGATGACCTTTGACATCTTTTATATGCTCTTTAATCTGGGGTTAACAGCGTATTTGATTGGTAATATGACCAATTTGGTTGTCCATGGCACAAGTCGAACCAGAAAATTTAGAGATACCATCCAAGCTGCCTCAAATTTTGCGCAAAGGAATCAATTGCCTCATCGGTTGCAAGACCAAATGCTTGCCCACTTGTGTTTGAAGTATAGAACAGACTCGGAAGGTTTGCAGCAGCAAGAGACACTTGATTCTCTTCCTAAGGCCATCAGATCCAGCATTTCACATTATCTTTTCTATTCTCTGATCGATAAGGTCTACTTGTTTCACGGGGTTTCGAATGACTTGCTCTTTCAATTGGTGTCAGAGATGAAAGCTGAATATTTTCCACCCAAAGAAGATGTTATCTTGCAAAATGAAGCCCCCACTGACTTTTATATACTGGTCACTGGTGCCGTGGAACTGGTAGTTCTTAAAAATGGGGTTGAACAGGTTGTTGGAGAGGCCAAAACTGGTGATCTTTGTGGTGAGATTGGTGTGCTCTGTTACAAGCCACAGCTTTTCACCGTTCGAACGAAGCGACTGAGCCAGTTGCTGAGGCTAAATCGGACTACTTTCTTGAATATTGTTCAGGCCAACGTGGGAGACGGAACCATTATCATGAATAATCTGCTTCAGCATTTAAAAGACCTCAACGATCCAATCATGGAGGGAGTTTTGGTGGAGATTGAGACCATGTTAGCTCGTGGTAGAATGGACCTACCAGTGAGTGTGTGCTTTGCGGCAGCAAGAGGGGATGACTTGTTGTTACATCAGTTGCTGAAACGAGGAATGGATCCAAACGAATCCGACAACAATCGAAGGACAGCTTTGCACATAGCAGCATCTCAAGGGAAAGAAAACTGTGTTCTGCTTCTGTTGGATTATGGGGCGGATCCTAACATTACAGATTTGGACGGTAATGTGGCACTATGGGAGGCTATGGTGGGAGAACATGAGTCAGTGAGGAAGGTGTTGGCAGAAAACGGAGCTAACTTGCAATGCGGGGATGTGGGCCAGTTTGCATGTAGCGCTGTTGAGCAGAACAATTTGAAGTTGCTGAAGGAGATAAAGCGGTACGGAGGAGATATCACCCTTCCGAGCATCAACAGTGGGACCACAGCATTGCACGTTGCAGTGTCGGAGGGCAACGTTGAAATGGTGAAATACCTTTTGGATCACGGGGCAAGCATTGACAAGCCGGACAAGCATGGCTGGACCGCCAGAGGTCTGGCAGATCAGCAATCACATACAGAAATAAAAGCCATTTTTGACTCTACTGGGGACCCTAAGGTTCACTCTTCCCTTTCCATTCCCGAGAAGCAGAGTGCGTTCAGGTTCCTTGGAAGGTTCACTAGTGAGCCAACCATGCCTTTACCCCTTGAGGGTTCATTTCATGGAGCGGATGCCTCTTTGAGCCAGAGCCAGAGACAGAGCCAGAACCGTCCAAGGCGTAGGAGCAGCAATTATCATAATTCACTCTTGGGGATAATGGTGGCAGCACATAATGGGGAAAAGGACCTGCTTTTGCCTCTTGACATGAATAACACGGGAAGCAATGGCATGAAGAGTAGTAGTCCAGCTAGAGTGATTATTAGTTGCCCTGAGAGGGGTGAGGTTGTGGGGAAGCTTGTTTTACTACCTGGAAGCTTTCAAGAGCTGCTTGAGATTGGAGCCAAAAAATTTGGTTTCTATCCTGCCAAGGTTGTTTGCAAAGATGGAGGTCAAATTGAAGATTTAGAGGTTATTAGAGATGGTGATCATCTGGTCTTTCTCGGTGCTGGTGAGTTGTAG 2613 0.4527 MLGCGQEEIELSRDGSHYSLSTGILPSLGAKSNRRIKLRRFILSPYDRRYRIWETFLIILVFYTAWVSPFEFGFLKKPEPPLSITDNIVNGFFFVDIVLTFFVAYIDKSTYLIVDDRKQIAWKYGRTWLAFDVISIIPSELIQKISPSPLQSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCAKLISVTLFAVHCAGCFYYLIAARYHDPKKTWIGSTMDNFLQHSLWSRYVMSIYWSITTLTTVGYGDLHPVNSREMTFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASNFAQRNQLPHRLQDQMLAHLCLKYRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLIDKVYLFHGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVELVVLKNGVEQVVGEAKTGDLCGEIGVLCYKPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDLNDPIMEGVLVEIETMLARGRMDLPVSVCFAAARGDDLLLHQLLKRGMDPNESDNNRRTALHIAASQGKENCVLLLLDYGADPNITDLDGNVALWEAMVGEHESVRKVLAENGANLQCGDVGQFACSAVEQNNLKLLKEIKRYGGDITLPSINSGTTALHVAVSEGNVEMVKYLLDHGASIDKPDKHGWTARGLADQQSHTEIKAIFDSTGDPKVHSSLSIPEKQSAFRFLGRFTSEPTMPLPLEGSFHGADASLSQSQRQSQNRPRRRSSNYHNSLLGIMVAAHNGEKDLLLPLDMNNTGSNGMKSSSPARVIISCPERGEVVGKLVLLPGSFQELLEIGAKKFGFYPAKVVCKDGGQIEDLEVIRDGDHLVFLGAGEL 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04797 870 Gene3D Jelly Rolls 332 492 IPR014710 -
Viun3g04797 870 FunFam Potassium channel KAT2 356 492 - -
Viun3g04797 870 PANTHER POTASSIUM CHANNEL AKT1 16 864 IPR045319 GO:0005249|GO:0006813
Viun3g04797 870 SMART cnmp_10 368 485 IPR000595 -
Viun3g04797 870 Pfam KHA, dimerisation domain of potassium ion channel 802 864 IPR021789 -
Viun3g04797 870 CDD CAP_ED 368 473 IPR000595 -
Viun3g04797 870 ProSiteProfiles KHA domain profile. 802 870 IPR021789 -
Viun3g04797 870 FunFam Potassium channel SKOR 51 289 - -
Viun3g04797 870 ProSiteProfiles Ankyrin repeat profile. 546 578 IPR002110 GO:0005515
Viun3g04797 870 ProSiteProfiles cAMP/cGMP binding motif profile. 368 470 IPR000595 -
Viun3g04797 870 Gene3D - 52 289 - -
Viun3g04797 870 SUPERFAMILY Voltage-gated potassium channels 45 289 - -
Viun3g04797 870 PRINTS EAG/ELK/ERG potassium channel family signature 63 70 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun3g04797 870 PRINTS EAG/ELK/ERG potassium channel family signature 236 253 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun3g04797 870 PRINTS EAG/ELK/ERG potassium channel family signature 280 289 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun3g04797 870 PRINTS EAG/ELK/ERG potassium channel family signature 86 96 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun3g04797 870 PRINTS EAG/ELK/ERG potassium channel family signature 262 273 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun3g04797 870 PRINTS EAG/ELK/ERG potassium channel family signature 97 106 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun3g04797 870 MobiDBLite consensus disorder prediction 731 761 - -
Viun3g04797 870 Pfam Ion transport protein 51 295 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Viun3g04797 870 Pfam Ankyrin repeats (3 copies) 618 685 IPR002110 GO:0005515
Viun3g04797 870 Pfam Ankyrin repeats (3 copies) 520 607 IPR002110 GO:0005515
Viun3g04797 870 SUPERFAMILY cAMP-binding domain-like 293 488 IPR018490 -
Viun3g04797 870 ProSiteProfiles Ankyrin repeat region circular profile. 644 676 - -
Viun3g04797 870 SMART ANK_2a 579 608 IPR002110 GO:0005515
Viun3g04797 870 SMART ANK_2a 546 575 IPR002110 GO:0005515
Viun3g04797 870 SMART ANK_2a 513 542 IPR002110 GO:0005515
Viun3g04797 870 SMART ANK_2a 644 673 IPR002110 GO:0005515
Viun3g04797 870 Gene3D - 514 698 IPR036770 -
Viun3g04797 870 ProSiteProfiles Ankyrin repeat region circular profile. 546 577 - -
Viun3g04797 870 MobiDBLite consensus disorder prediction 741 761 - -
Viun3g04797 870 SUPERFAMILY Ankyrin repeat 519 698 IPR036770 -
Viun3g04797 870 Pfam Cyclic nucleotide-binding domain 388 472 IPR000595 -
Viun3g04797 870 ProSiteProfiles Ankyrin repeat profile. 644 676 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04797 Viun-Chr3 55312137 55318603 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04797 11 864 Ion Channels AT2G25600 63.140 0.0 1099
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04797 K21867 - gmx:100819491 1571.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04797 3 55312137 55318603 Viun3g04797 3 55312137 55318603 ECH