Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04794 ATGTATTCTGTAGTGTTGGCAGCTAGATCTTCCTGGAAAGTTTGGGATGCTTTGACAGGAGATGAATTGCACTCATTTGAGCACAAGCACATTGTTCGAGCATGTGCCTTTTCAGAGGATACTCACCTTTTGCTCACTGGGGGAGTGGAAAAAATTCTCCGCATCTATGATATGAATCGGCCTGATGCACCACCCAGAGAAGTGGATAAGTCCCCTGGTTCTGTCAGAACTGTTGCCTGGCTTCATAGTGACCAGACAATATTGAGTTCTTGTACCGATATGGGAGGAGTCAGGTTATGGGATGTAAGAAGTGGTAAAATAGTCCAGACACTTGAAACCAAGTCATCTGTGACAAGTGCTGAAGTGAGTCAGGACGGCCGTTATATTACAACTGCTGATGGTTCTACTGTAAAATTTTGGGATGCTAATTACTATGGACTGGTGAAGAGCTATGATATGCCCTGCACTGTGGAATCCGTTTCACTGGAGCCTAAATTTGGGAACAAGTTCGTTGCAGGAGGAGAAGATATGTGGGTTCATGTTTTTGATTTCCATACAGGCAATGAGATTGCATGCAACAAGGGGCACCATGGTCCTGTCCATTGTGTTCGTTTTTCTCCTGGTGGAGAATCCTATGCCTCTGGATCTGAGGATGGAACCATCAGAATATGGCAGACTGGCCCATTGACTCTCGATGACTCGGAGGCTTTGTCTGCAAATGGATCAATTGATAAGGTGAAGGTAACTGCAGATGAGGTGTCACGCAAGATTGAGGGTTTTCATATTGCTGATGAGGGGAAATCAAAAGCTAAGGATGAGGCTGTGGAGGAATCAAGCTAG 840 0.4524 MYSVVLAARSSWKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTGGVEKILRIYDMNRPDAPPREVDKSPGSVRTVAWLHSDQTILSSCTDMGGVRLWDVRSGKIVQTLETKSSVTSAEVSQDGRYITTADGSTVKFWDANYYGLVKSYDMPCTVESVSLEPKFGNKFVAGGEDMWVHVFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLTLDDSEALSANGSIDKVKVTADEVSRKIEGFHIADEGKSKAKDEAVEESS 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04794 279 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 193 225 - -
Viun3g04794 279 Gene3D - 3 153 IPR015943 GO:0005515
Viun3g04794 279 Gene3D - 154 259 IPR015943 GO:0005515
Viun3g04794 279 Pfam WD domain, G-beta repeat 191 224 IPR001680 GO:0005515
Viun3g04794 279 Pfam WD domain, G-beta repeat 21 57 IPR001680 GO:0005515
Viun3g04794 279 Pfam WD domain, G-beta repeat 106 141 IPR001680 GO:0005515
Viun3g04794 279 SMART WD40_4 186 225 IPR001680 GO:0005515
Viun3g04794 279 SMART WD40_4 19 57 IPR001680 GO:0005515
Viun3g04794 279 SMART WD40_4 144 183 IPR001680 GO:0005515
Viun3g04794 279 SMART WD40_4 61 101 IPR001680 GO:0005515
Viun3g04794 279 SMART WD40_4 104 141 IPR001680 GO:0005515
Viun3g04794 279 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 7 268 - -
Viun3g04794 279 ProSiteProfiles Trp-Asp (WD) repeats profile. 193 225 IPR001680 GO:0005515
Viun3g04794 279 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 9 227 IPR011047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04794 Viun-Chr3 55267025 55270905 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04794 7 223 Eukaryotic Initiation Factors Gene Family AT2G46290 25.882 1.78e-21 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04794 K13137 - gmx:100818422 538.11