Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04788 ATGAAGGATCCAGCGGAGGATCAAGTGAAATCTAGGAGGGCCCTGCACAGATCAAAAGACCTTAGAAGAAAAGATAGAAGAAGAAGAAGCCAATGCAAACAAGATAAATTACAAGAAACAGGACTTGACTCACAATTGGTTTCCTCTGCTTGCAAAAGTCTTGTGTTTCCTGCCAGACCTGGCTATGGCCAACTGGGGACAAAGTGTCTGGTCAAAGCTAATCATTTTCTGGCAGATATATCAGCTTCTGACTTGAGCCATTACAATGTTACAATAACACCTGAAGTTACCTCTCGTAAAACAAGCAAAGCCATCGTATCTGAGTTGGTGAGGCTTCACAGGAACACTGACTTGGGGATGAGGCTTCCTGTTTATGATGGAGGAAGAAATCTCTACACTGCTGGCTTGCTTCCTTTTGCATCCAAAGAGTTCTCCATAGTATTGAGCCAGGATGATGAGGGTACTGGTGGTACCAGGGAAAGAGAATTTGAAGTGGTGATAAAGTTTGCAGCTCGTGTCAGCATGCATCAATTACGTGAGCTTCTGAGTGGGAAACAAGTGGACACCCCGCAAGAGGCGCTTACTGTCATTGACATTGTATTGAGGGAGCTTGCAGCTCAGAGCTTCGTCTCAATTGGGAGGTTTCTATATTCTCCGGATTTAAGAAAACCACAGCAATTAGGTGGTGGCCTGGAATCATGGCGTGGCTTCTACCAAAGTATTAGGCCTACTCAGATGGGATTGTCCCTTAATATTGACATGTCATCAATGGCGTTTATTGAACCACTACCTGTAATTGACTTTGTTGCTCAAATTTTGGGAAAAGACGTGCTCTCAAAGCCACTGTCAGATGCGGATCGTGTCAAGATTAAGAAAGCCTTAAGAGGTGTGAAAGTGGAAGTTACACATAGAGGAAGTTTTCGAAGGAAGTACAGAATTACAGGATTGACATCACAACCTACAAGGGAGCTCAATTTCCCTGTCGATGAGAAAATGAACATGAAATCAGTAGTTGATTACTTTCAAGAAATGTATGGATATACAATTATATATTCTCATCTACCCTGCCTTCAAGTAGGAAGTCAAAAGAAGGTGAACTATTTGCCTATGGAGGCATGTAAGATAGTTGGGGGTCAGAGATATACAAAAGGGCTCAACGAAAAGCAGATAACTTCTCTGCTGAAGGTCTCATGCCAGAGACCACGTGAACAAGAGACAGACATTCTACAGACAATTCAAGAAAATAATTATGAGTATAATCCCTATGTAAAGGAGTTTGGTATCAGCATTGACAGCAAACTTGCATCAGTTGAAGCTCGGGTTCTTCCTGCTCCATGGTTGAAATATCACGACACTGGAAGAGAGAAAGAACACTTGCCACAAGTTGGTCAATGGAACATGATGAACAAGAAAGTTATAAACGGAAGCACTGTAAGATATTGGGCATGTATCAATTTCTCACGAAGTATCCAAGAAATTGCTCGCGGGTTTTGCCAACAGTTGGTTCAAATGTGCCAAATCTCAGGCATGGAATTTAGTCTAGACCCTGTGATTCCTATATACACAGCAAGACCTGATATGGTAAAGAAAGCCTTGAAGTACGTACATTCTGCTGTACGAGATAAACTTGGTGGGAAAGAACTAGAGTTGCTAATTGCCATTCTTCCAGATAATAACGGCTCTCTGTATGGTGATCTCAAAAGAATCTGCGAAACAGATCTGGGGTTGATTTCTCAGTGCTGTCTTTCAAAACACGTATTCAAGATCAATAGACAGTATCTGGCAAATGTGGCCTTAAAGATCAATGTCAAGTTGGGAGGAAGGAACACAGTACTTTTGGATGCCTTAAGTTGGAGGATCCCATTGGTTAGTGACATTCCAACAATAATTTTTGGAGCTGATGTGACTCATCCAGAATCTGGAGAGGACCCTTGTCCATCCATTGCTGCTGTTGTAGCTTCCCAGGACTGGCCGGAAGTAACAAAGTATGCAGGATTAGTATGTGCTCAGCCTCATCGTGAGGAACTCATTCAAGATCTTTTTAAGTGTTGGAAGGATCCTCATCATGGTGTAGTTTATGGTGGCATGATCAGAGAGCTGTTACTCTCGTTTAAGAAAGCAACCGGACAAAAACCATTGAGAATAATATTTTACAGGGATGGAGTAAGTGAAGGACAATTCTACCAAGTTTTGTTGTATGAGCTTGATGCCATTCGTAAGGCTTGTGCATCTTTGGAACCGAGTTACCAACCTCCGGTAACATTTGTTGTGGTTCAAAAACGGCATCACACCAGACTTTTCTCAAACAATCATGACGACAGAAACAGCACTGATAAGAGTGGGAATATCTTACCAGGTACCGTGGTGGATTCTAAGATCTGTCATCCTACGGAATTCGATTTCTATTTATGCAGTCATGCAGGAATTCAGGGTACAAGTAGACCAGCTCATTATCATGTTCTGTGGGACGAGAACAATTTCACTGCCGATGAGATTCAATCTCTGACCAACAACTTGTGTTACACATATGCAAGATGTACACGGTCTGTTTCTGTAGTGCCTCCTGCGTACTATGCTCACTTGGCAGCATACAGAGCTCGTTTCTACATGGAACCAGATGTTCATGAGATTGCTAGATCAAAAGATGAGTCGGTTCGGCCACTACCAGCTCTGAAAGAGAAGGTGAAGAATGTCATGTTTTACTGTTGA 2709 0.4238 MKDPAEDQVKSRRALHRSKDLRRKDRRRRSQCKQDKLQETGLDSQLVSSACKSLVFPARPGYGQLGTKCLVKANHFLADISASDLSHYNVTITPEVTSRKTSKAIVSELVRLHRNTDLGMRLPVYDGGRNLYTAGLLPFASKEFSIVLSQDDEGTGGTREREFEVVIKFAARVSMHQLRELLSGKQVDTPQEALTVIDIVLRELAAQSFVSIGRFLYSPDLRKPQQLGGGLESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDVLSKPLSDADRVKIKKALRGVKVEVTHRGSFRRKYRITGLTSQPTRELNFPVDEKMNMKSVVDYFQEMYGYTIIYSHLPCLQVGSQKKVNYLPMEACKIVGGQRYTKGLNEKQITSLLKVSCQRPREQETDILQTIQENNYEYNPYVKEFGISIDSKLASVEARVLPAPWLKYHDTGREKEHLPQVGQWNMMNKKVINGSTVRYWACINFSRSIQEIARGFCQQLVQMCQISGMEFSLDPVIPIYTARPDMVKKALKYVHSAVRDKLGGKELELLIAILPDNNGSLYGDLKRICETDLGLISQCCLSKHVFKINRQYLANVALKINVKLGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDPCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKCWKDPHHGVVYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFSNNHDDRNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPDVHEIARSKDESVRPLPALKEKVKNVMFYC 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04788 902 MobiDBLite consensus disorder prediction 1 37 - -
Viun3g04788 902 FunFam Protein argonaute-2 256 382 - -
Viun3g04788 902 SMART DUF1785_2 210 262 IPR014811 -
Viun3g04788 902 FunFam Argonaute 10 441 613 - -
Viun3g04788 902 FunFam protein argonaute 10-like 619 902 - -
Viun3g04788 902 MobiDBLite consensus disorder prediction 15 30 - -
Viun3g04788 902 CDD Piwi_ago-like 421 870 IPR045246 -
Viun3g04788 902 Gene3D - 441 613 - -
Viun3g04788 902 Pfam Argonaute linker 2 domain 405 449 IPR032472 -
Viun3g04788 902 Pfam PAZ domain 288 393 IPR003100 GO:0005515
Viun3g04788 902 SMART Piwi_a_2 550 871 IPR003165 GO:0003676
Viun3g04788 902 ProSiteProfiles PAZ domain profile. 263 377 IPR003100 GO:0005515
Viun3g04788 902 Gene3D paz domain 257 381 - -
Viun3g04788 902 SMART PAZ_2_a_3 267 399 IPR003100 GO:0005515
Viun3g04788 902 Pfam N-terminal domain of argonaute 68 201 IPR032474 -
Viun3g04788 902 Gene3D - 619 902 IPR036397 GO:0003676
Viun3g04788 902 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 55 872 - -
Viun3g04788 902 CDD PAZ_argonaute_like 262 376 - -
Viun3g04788 902 Pfam Argonaute linker 1 domain 211 260 IPR014811 -
Viun3g04788 902 Pfam Mid domain of argonaute 460 536 IPR032473 -
Viun3g04788 902 SUPERFAMILY PAZ domain 258 417 IPR036085 GO:0005515
Viun3g04788 902 Pfam Piwi domain 551 870 IPR003165 GO:0003676
Viun3g04788 902 ProSiteProfiles Piwi domain profile. 550 871 IPR003165 GO:0003676
Viun3g04788 902 SUPERFAMILY Ribonuclease H-like 541 872 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04788 Viun-Chr3 55202495 55214920 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04788 41 902 Eukaryotic Initiation Factors Gene Family AT5G43810 73.744 0.0 1385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04788 K11593 - gmx:100808457 1702.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04788 3 55202495 55214920 Viun3g04788 3 55202495 55214920 ECH
Viun3g04788 3 55202495 55214920 Viun9g00874 9 6634356 6647606 PCT