Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04786 ATGACGATGGACGACGATAGCTCTATATATGTTGGGGGTCTCCCTTACGACATCACCGACGAAACCATTCGCACTGTCTTCAATCTGTATGGTGCCATTCTCGATGTGAAGATTATCAACGACCAACGCGGTAGGGGGAAGTGCTATTGTTTTGTTACTTTCACGAATCCTAGGTCAGCAATCGACGCCATCAACGACATGAATGGCAGAACCATAGACGGGCGTGTGGTTAAAGTTAATGGGGTGAGGTCTCGTGGGGGCAGGTCAAACTTTGGCAGAGAACGGTATTATTATCACAATGATGAGAGGAATGGAGATTGGGATCGTGGGAGAGATCGAGACCGAGATTATGATCATGATAATAGTGGTAGGGATGGATACAGGAATCGGAGCAATGATTGGAGTCGAGATCGTGATAGGTCTCGAGACCGAGACCGAGACCAGGACAGGGATAGAAGATTTGAGCATATGCATGACTATGATGAAGATAGAGATCCTATGTTAGATAATGACTGGAGTAGAGAGGATGATAGAGTTGAAAATGAGCAAGAACATAGCAGGGGGGATGGTGGAGATGAGGATAGAGACCACAACTTGGATTTTAACGCAGACAGGAAAACGGATAGGACAAGTGACCCTGATAGAAGTTTTGATGAGGATAGAAAAGATCAGTCAAGGAGAAACAATGACTTGAATGTTACAAATCAACATAGCATGGATCTTTCATCAGAATCAACTGGTGCTCGCGATGATCAGGTAGAAGCTCAAATAGAGAGCTCAACTAAGCAGCTTGATCAACTTAAAAAAGAGGTTTCTCAAATGGAAGAGGGATTGGAAGAGAAAAGGGTTCATGTTAAGGAATTGCAAAAGCAATCTAAGAAACTGGAGGATGCACTGATCAGTGCAAAGAAAAACACTTCATATCGTCAGATGCAGTTGATAAAGCTTCATAAATGTTTTCTGCAAGTGAAAGATTACACAGAAAGACTTAAAACTAGTGAAAAGGAACTTCAGGCTCTAATTGATACAGTACTGTTAGAGATTGATGGTGATGGCGTTGGATTAAAGGATGGACAACTAACAAATGGAAGTCTTGATGCTAGGTAG 1107 0.4255 MTMDDDSSIYVGGLPYDITDETIRTVFNLYGAILDVKIINDQRGRGKCYCFVTFTNPRSAIDAINDMNGRTIDGRVVKVNGVRSRGGRSNFGRERYYYHNDERNGDWDRGRDRDRDYDHDNSGRDGYRNRSNDWSRDRDRSRDRDRDQDRDRRFEHMHDYDEDRDPMLDNDWSREDDRVENEQEHSRGDGGDEDRDHNLDFNADRKTDRTSDPDRSFDEDRKDQSRRNNDLNVTNQHSMDLSSESTGARDDQVEAQIESSTKQLDQLKKEVSQMEEGLEEKRVHVKELQKQSKKLEDALISAKKNTSYRQMQLIKLHKCFLQVKDYTERLKTSEKELQALIDTVLLEIDGDGVGLKDGQLTNGSLDAR 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04786 368 SMART rrm1_1 8 80 IPR000504 GO:0003723
Viun3g04786 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Viun3g04786 368 PANTHER GEO13361P1-RELATED 6 185 - -
Viun3g04786 368 CDD RRM_SF 9 80 - -
Viun3g04786 368 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 197 - -
Viun3g04786 368 Gene3D - 2 97 IPR012677 -
Viun3g04786 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Viun3g04786 368 Coils Coil 323 343 - -
Viun3g04786 368 MobiDBLite consensus disorder prediction 108 251 - -
Viun3g04786 368 MobiDBLite consensus disorder prediction 108 228 - -
Viun3g04786 368 MobiDBLite consensus disorder prediction 229 251 - -
Viun3g04786 368 Coils Coil 250 305 - -
Viun3g04786 368 SUPERFAMILY RNA-binding domain, RBD 4 112 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04786 Viun-Chr3 55181218 55185271 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04786 7 79 Eukaryotic Initiation Factors Gene Family AT2G36660 34.247 3.81e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04786 - - vun:114179118 676.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04786 3 55181218 55185271 Viun3g04786 3 55181218 55185271 ECH