Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04781 ATGAACTTTTTGTCACTCTCTGGCATACTGTGTAGCGGGAAACATATTTTCGGAGGCAGTCACCATAGCCATACACTGCACACCTTCTACACTGGGCATCGCCAAGATCAAAACTTTCCACTCTTTGAAGATCAAACCATGTCTCATTTCAACTGGGAAGCTGATAAAATGTTAGATTTGTATATCTACGATTATCTTACGAAGAGACAATTGCATACTACTGCAAGATTATTCAAGGCCGAAGCAAATGTTTCAACGGGTCCTGTTGTTATAGAAGCACCTCGTGGTTTTCTTTTTGAGTGGTGGTCTGTCTTCTGGGACATATATATTGCCAGGGCAAATCAGAAGGCAGAAGCAGCATCTTACAGTAAGAATCAACAAATTAAAGCTCGATTAATGCAGAAGCAACAAGAACAAGAGTTTCAGAATGCAAACCTAAATCAACAAACACAAATGCTGCTCTTGTTGCAAAGACGTGCTCAGCAGCAGCAACGTCTGGGTGGAAATCAATTTATTAGTGGCAGTGCTAGCTGTCCTATTAGCAATGATCCTTTAATGAGGCAGAACCAGGCAGCTCCTAATGCTATGGCAACAAAATTATACAATGACAAGTTGAAGCTTCCGTGTCAGAGAGATGTTTTAGAAGATGCAAACATTAAGCAAAAGGTAGCTGATGACGTTGGTAAGCTTTTAAATCCAAACCATGCAGTATTATTGAAAGCGGCTGGGATGTCTGGTGAAATGGCTTCAGGGCAAACATTGCTCGGGAACATTCAACACCTTCAATATCTGAACCAGAAGCTTCCAGGGTCTATGCAAGACGTAAAGAGTGAGATGAATGCATTGCAGGGGTCTCAAGCTATTTCAGAAGGATCCTTGATTGGTTGTCATGGATCTAATCCAGGTGGTAGCAATTTGACTCTGAAAGGATGGCCTCTAGCAGGGCTAGATGAGCTTCGTTCTGGCATTCTCCAGCATAATAGTTTGATGCACTCTCCACAATCTTTCAATCAACTTTCTCTACGGCAACAACTTATGCTTCAGGCACAACAAAATTTGATTTCTCCTTCTGTCTTTGATATTGAGCGCAGAAGACTTGGGATGCTTTTTAATGATCGAAACATGAGTCTTGCGAAAGATGGCCAGTCAAATTCCGTAGATGATTTAGGTCCCAGTAATGGATCACCTGCACAAGTTGGTTCCCCAGTGGTGTCCCATCCAGACTCAGATGTGTTCTTTAAGCAACAAATTCAAAATAGTAACCAGCAGCTTCAACAATATTCTCAACATCCTCTTCCTAGCCAACCATCTGATAATCTCCAGCAGCAGCAAGAAAAAATTGGTCCCGGTCCTGGAAGCATGACTATGGAGGGAAATGTGTCCAATTCCTTACAAGGAAACGATCAGGCTCCAAAGTGTAAACTAGTGCGAAAGCGAAAGTCAGCATCATCTTCAGGTCCTGGTAATAGCTCTGGAACTACAAACACCACTGGACCACCTGCCAGTTCACCTTCAACACCATCTACACAAACACCTGGAGAGATGATAACAGTCTCAACTCTGCAACAAAATGCTCCTTCCTCTAAGTCATCATTTATGTTTGGTACTGATGGTTTGGGCTCACTTACATCATCACAAAATCAATTGGCTCATATGGATCATCTCGTGGGTGATGGATGTTTGGGTGACAATATTGAGCCATTCTTATCTCCCGATGATAATAACATCACAGAAAACGTTTGTAAAGGATTAGGTTTGAAGGAGATCAAGCGTATAATGGCAGGTTCACATAAAGTTGAGTGTTGTCACTTCTCCTCAGATGGAAAACTTCTTGCTACTGGTGGCCATGATAACAAGGTTTCTCTGTGGTGCACCGAATTGTTTAACCAGAAATCTACTCTTGAAGAGCACAGTGAATGGATAACTGATGTTCGATTTTGCCCAAGCATGCCGCGTGTTGCTACATCCTCAGCAGACAAAACTGTTAGGGTTTGGGATATTGATAATCCAGGTTATTCTCTTCGAACATTCACTGGACATGCTTCGACAGTGACGTCTCTAGATTTTCACCCTAGCAAAGATGACCTTATTTGCTCATGTGATAATAGTGAGATAAGATACTGGAGTATTAAAAATGGTAGTTGTACTGGGGTTTTCAAGTTTTTTATCAGGGTGGTGCAACTCAGATGA 2190 0.4196 MNFLSLSGILCSGKHIFGGSHHSHTLHTFYTGHRQDQNFPLFEDQTMSHFNWEADKMLDLYIYDYLTKRQLHTTARLFKAEANVSTGPVVIEAPRGFLFEWWSVFWDIYIARANQKAEAASYSKNQQIKARLMQKQQEQEFQNANLNQQTQMLLLLQRRAQQQQRLGGNQFISGSASCPISNDPLMRQNQAAPNAMATKLYNDKLKLPCQRDVLEDANIKQKVADDVGKLLNPNHAVLLKAAGMSGEMASGQTLLGNIQHLQYLNQKLPGSMQDVKSEMNALQGSQAISEGSLIGCHGSNPGGSNLTLKGWPLAGLDELRSGILQHNSLMHSPQSFNQLSLRQQLMLQAQQNLISPSVFDIERRRLGMLFNDRNMSLAKDGQSNSVDDLGPSNGSPAQVGSPVVSHPDSDVFFKQQIQNSNQQLQQYSQHPLPSQPSDNLQQQQEKIGPGPGSMTMEGNVSNSLQGNDQAPKCKLVRKRKSASSSGPGNSSGTTNTTGPPASSPSTPSTQTPGEMITVSTLQQNAPSSKSSFMFGTDGLGSLTSSQNQLAHMDHLVGDGCLGDNIEPFLSPDDNNITENVCKGLGLKEIKRIMAGSHKVECCHFSSDGKLLATGGHDNKVSLWCTELFNQKSTLEEHSEWITDVRFCPSMPRVATSSADKTVRVWDIDNPGYSLRTFTGHASTVTSLDFHPSKDDLICSCDNSEIRYWSIKNGSCTGVFKFFIRVVQLR 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04781 729 Coils Coil 129 149 - -
Viun3g04781 729 MobiDBLite consensus disorder prediction 379 407 - -
Viun3g04781 729 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 677 714 - -
Viun3g04781 729 Gene3D - 508 723 IPR015943 GO:0005515
Viun3g04781 729 ProSiteProfiles LIS1 homology (LisH) motif profile. 54 86 IPR006594 GO:0005515
Viun3g04781 729 ProSiteProfiles Trp-Asp (WD) repeats profile. 634 669 IPR001680 GO:0005515
Viun3g04781 729 ProSiteProfiles Trp-Asp (WD) repeats profile. 677 718 IPR001680 GO:0005515
Viun3g04781 729 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 623 IPR001680 GO:0005515
Viun3g04781 729 MobiDBLite consensus disorder prediction 379 402 - -
Viun3g04781 729 SMART Lish 54 86 IPR006594 GO:0005515
Viun3g04781 729 Pfam WD domain, G-beta repeat 631 666 IPR001680 GO:0005515
Viun3g04781 729 Pfam WD domain, G-beta repeat 597 623 IPR001680 GO:0005515
Viun3g04781 729 Pfam WD domain, G-beta repeat 673 709 IPR001680 GO:0005515
Viun3g04781 729 MobiDBLite consensus disorder prediction 421 469 - -
Viun3g04781 729 PANTHER TRANSCRIPTION ACTIVATOR MSS11 133 720 - -
Viun3g04781 729 MobiDBLite consensus disorder prediction 482 513 - -
Viun3g04781 729 ProSitePatterns Trp-Asp (WD) repeats signature. 653 667 IPR019775 -
Viun3g04781 729 Pfam LisH 56 82 IPR006594 GO:0005515
Viun3g04781 729 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 634 669 - -
Viun3g04781 729 SMART WD40_4 627 666 IPR001680 GO:0005515
Viun3g04781 729 SMART WD40_4 585 624 IPR001680 GO:0005515
Viun3g04781 729 SMART WD40_4 670 709 IPR001680 GO:0005515
Viun3g04781 729 SUPERFAMILY WD40 repeat-like 586 720 IPR036322 GO:0005515
Viun3g04781 729 MobiDBLite consensus disorder prediction 421 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04781 Viun-Chr3 55111511 55123468 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04781 588 728 Miscellaneous Gene Families AT5G08390 30.282 3.18e-14 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Viun3g04781 WD40 5.7e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04781 - - vun:114177037 1353.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04781 3 55111511 55123468 Viun3g04781 3 55111511 55123468 ECH