Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04780 ATGAACTTTTTGTCACTCTCTGGCATACTGTGTAGCGGGAAACATATTTTCGGAGGCAGTCACCATAGCCATACACTGCACACCTTCTACACTGGGCATCGCCAAGATCAAAACTTTCCACTCTTTGAAGATCAAACCATGTCTCATTTCAACTGGGAAGCTGATAAAATGTTAGATTTGTATATCTACGATTATCTTACGAAGAGACAATTGCATACTACTGCAAGATTATTCAAGGCCGAAGCAAATGTTTCAACGGGTCCTGTTGTTATAGAAGCACCTCGTGGTTTTCTTTTTGAGTGGTGGTCTGTCTTCTGGGACATATATATTGCCAGGGCAAATCAGAAGGCAGAAGCAGCATCTTACAGTAAGAATCAACAAATTAAAGCTCGATTAATGCAGAAGCAACAAGAACAAGAGTTTCAGAATGCAAACCTAAATCAACAAACACAAATGCTGCTCTTGTTGCAAAGACGTGCTCAGCAGCAGCAACGTCTGGGTGGAAATCAATTTATTAGTGGCAGTGCTAGCTGTCCTATTAGCAATGATCCTTTAATGAGGCAGAACCAGGCAGCTCCTAATGCTATGGCAACAAAATTATACAATGACAAGTTGAAGCTTCCGTGTCAGAGAGATGTTTTAGAAGATGCAAACATTAAGCAAAAGGTAGCTGATGACGTTGGTAAGCTTTTAAATCCAAACCATGCAGTATTATTGAAAGCGGCTGGGATGTCTGGTGAAATGGCTTCAGGGCAAACATTGCTCGGGAACATTCAACACCTTCAATATCTGAACCAGAAGCTTCCAGGGTCTATGCAAGACGTAAAGAGTGAGATGAATGCATTGCAGGGGTCTCAAGCTATTTCAGAAGGATCCTTGATTGGTTGTCATGGATCTAATCCAGGTGGTAGCAATTTGACTCTGAAAGGATGGCCTCTAGCAGGGCTAGATGAGCTTCGTTCTGGCATTCTCCAGCATAATAGTTTGATGCACTCTCCACAATCTTTCAATCAACTTTCTCTACGGCAACAACTTATGCTTCAGGCACAACAAAATTTGATTTCTCCTTCTGTCTTTGATATTGAGCGCAGAAGACTTGGGATGCTTTTTAATGATCGAAACATGAGTCTTGCGAAAGATGGCCAGTCAAATTCCGTAGATGATTTAGGTCCCAGTAATGGATCACCTGCACAAGTTGGTTCCCCAGTGGTGTCCCATCCAGACTCAGATGTGTTCTTTAAGCAACAAATTCAAAATAGTAACCAGCAGCTTCAACAATATTCTCAACATCCTCTTCCTAGCCAACCATCTGATAATCTCCAGCAGCAGCAAGAAAAAATTGGTCCCGGTCCTGGAAGCATGACTATGGAGGGAAATGTGTCCAATTCCTTACAAGGAAACGATCAGGCTCCAAAGTGTAAACTAGTGCGAAAGCGAAAGTCAGCATCATCTTCAGGTCCTGGTAATAGCTCTGGAACTACAAACACCACTGGACCACCTGCCAGTTCACCTTCAACACCATCTACACAAACACCTGGAGAGATGATAACAGTCTCAACTCTGCAACAAAATGCTCCTTCCTCTAAGTCATCATTTATGTTTGGTACTGATGGTTTGGGCTCACTTACATCATCACAAAATCAATTGGCTCATATGGATCATCTCGTGGGTGATGGATGTTTGGGTGACAATATTGAGCCATTCTTATCTCCCGATGATAATAACATCACAGAAAACGTTTGTAAAGGATTAGGTTTGAAGGAGATCAAGCGTATAATGGCAGGTTCACATAAAGTTGAGTGTTGTCACTTCTCCTCAGATGGAAAACTTCTTGCTACTGGTGGCCATGATAACAAGGTTTCTCTGTGGTGCACCGAATTGTTTAACCAGAAATCTACTCTTGAAGAGCACAGTGAATGGATAACTGATGTTCGATTTTGCCCAAGCATGCCGCGTGTTGCTACATCCTCAGCAGACAAAACTGTTAGGGTTTGGGATATTGATAATCCAGGTTATTCTCTTCGAACATTCACTGGACATGCTTCGACAGTGACGTCTCTAGATTTTCACCCTAGCAAAGATGACCTTATTTGCTCATGTGATAATAGTGAGATAAGATACTGGAGTATTAAAAATGGTAGTTGTACTGGGGTTTTCAAGGGTGGTGCAACTCAGATGAGATTTCAACCTTGTTTGGGAAGGCTTCTTGCAGCTGCCGTAGATAATTTCGTATCCATTTTTGATGTAGAAACCCTGGCTTGCAGACTTAAATTACAGGGCCATAATAATGTTGTGCGTTCTGTGTGCTGGGATTCGTCTGGAAAATATTTGGCTTCTGTGAGTGATGATCTGGTTAGAGTTTGGAATGTTGGATCTGGCAGCAAAGGGGAATGCATTCACGAGTTGGCTGCATCAGGGAACAAATTCAACACCTGTGTTTTCCATCCCTTCTATCCTTTGTTGTTCATTGGCTGCAACAAGACTATTGATGTGTTGGACTTCGGTGAGAAGAAGACATTTACCATGCATGCACACGAAAAGCTTGTATCTTCCTTGGCGGTATCAAATGCTGGCTTGCTGGCTTCAACTAGTCATGACAAACATTTGAAATTCTGGAAGTGA 2622 0.4222 MNFLSLSGILCSGKHIFGGSHHSHTLHTFYTGHRQDQNFPLFEDQTMSHFNWEADKMLDLYIYDYLTKRQLHTTARLFKAEANVSTGPVVIEAPRGFLFEWWSVFWDIYIARANQKAEAASYSKNQQIKARLMQKQQEQEFQNANLNQQTQMLLLLQRRAQQQQRLGGNQFISGSASCPISNDPLMRQNQAAPNAMATKLYNDKLKLPCQRDVLEDANIKQKVADDVGKLLNPNHAVLLKAAGMSGEMASGQTLLGNIQHLQYLNQKLPGSMQDVKSEMNALQGSQAISEGSLIGCHGSNPGGSNLTLKGWPLAGLDELRSGILQHNSLMHSPQSFNQLSLRQQLMLQAQQNLISPSVFDIERRRLGMLFNDRNMSLAKDGQSNSVDDLGPSNGSPAQVGSPVVSHPDSDVFFKQQIQNSNQQLQQYSQHPLPSQPSDNLQQQQEKIGPGPGSMTMEGNVSNSLQGNDQAPKCKLVRKRKSASSSGPGNSSGTTNTTGPPASSPSTPSTQTPGEMITVSTLQQNAPSSKSSFMFGTDGLGSLTSSQNQLAHMDHLVGDGCLGDNIEPFLSPDDNNITENVCKGLGLKEIKRIMAGSHKVECCHFSSDGKLLATGGHDNKVSLWCTELFNQKSTLEEHSEWITDVRFCPSMPRVATSSADKTVRVWDIDNPGYSLRTFTGHASTVTSLDFHPSKDDLICSCDNSEIRYWSIKNGSCTGVFKGGATQMRFQPCLGRLLAAAVDNFVSIFDVETLACRLKLQGHNNVVRSVCWDSSGKYLASVSDDLVRVWNVGSGSKGECIHELAASGNKFNTCVFHPFYPLLFIGCNKTIDVLDFGEKKTFTMHAHEKLVSSLAVSNAGLLASTSHDKHLKFWK 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04780 873 SMART WD40_4 627 666 IPR001680 GO:0005515
Viun3g04780 873 SMART WD40_4 751 789 IPR001680 GO:0005515
Viun3g04780 873 SMART WD40_4 585 624 IPR001680 GO:0005515
Viun3g04780 873 SMART WD40_4 795 833 IPR001680 GO:0005515
Viun3g04780 873 SMART WD40_4 670 709 IPR001680 GO:0005515
Viun3g04780 873 SMART WD40_4 712 748 IPR001680 GO:0005515
Viun3g04780 873 SMART WD40_4 835 873 IPR001680 GO:0005515
Viun3g04780 873 Gene3D - 721 873 IPR015943 GO:0005515
Viun3g04780 873 MobiDBLite consensus disorder prediction 379 407 - -
Viun3g04780 873 Pfam WD domain, G-beta repeat 597 623 IPR001680 GO:0005515
Viun3g04780 873 Pfam WD domain, G-beta repeat 839 873 IPR001680 GO:0005515
Viun3g04780 873 Pfam WD domain, G-beta repeat 673 709 IPR001680 GO:0005515
Viun3g04780 873 Pfam WD domain, G-beta repeat 754 789 IPR001680 GO:0005515
Viun3g04780 873 Pfam WD domain, G-beta repeat 631 666 IPR001680 GO:0005515
Viun3g04780 873 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 677 714 - -
Viun3g04780 873 ProSiteProfiles LIS1 homology (LisH) motif profile. 54 86 IPR006594 GO:0005515
Viun3g04780 873 ProSiteProfiles Trp-Asp (WD) repeats profile. 677 718 IPR001680 GO:0005515
Viun3g04780 873 MobiDBLite consensus disorder prediction 379 402 - -
Viun3g04780 873 PANTHER TRANSCRIPTION ACTIVATOR MSS11 126 873 - -
Viun3g04780 873 Pfam LisH 56 82 IPR006594 GO:0005515
Viun3g04780 873 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 842 873 - -
Viun3g04780 873 MobiDBLite consensus disorder prediction 482 513 - -
Viun3g04780 873 ProSiteProfiles Trp-Asp (WD) repeats profile. 842 873 IPR001680 GO:0005515
Viun3g04780 873 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 634 669 - -
Viun3g04780 873 Coils Coil 129 149 - -
Viun3g04780 873 ProSiteProfiles Trp-Asp (WD) repeats profile. 634 669 IPR001680 GO:0005515
Viun3g04780 873 Gene3D - 577 720 IPR015943 GO:0005515
Viun3g04780 873 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 623 IPR001680 GO:0005515
Viun3g04780 873 ProSiteProfiles Trp-Asp (WD) repeats profile. 758 790 IPR001680 GO:0005515
Viun3g04780 873 CDD WD40 588 873 - -
Viun3g04780 873 SMART Lish 54 86 IPR006594 GO:0005515
Viun3g04780 873 MobiDBLite consensus disorder prediction 421 469 - -
Viun3g04780 873 SUPERFAMILY WD40 repeat-like 597 873 IPR036322 GO:0005515
Viun3g04780 873 ProSitePatterns Trp-Asp (WD) repeats signature. 653 667 IPR019775 -
Viun3g04780 873 MobiDBLite consensus disorder prediction 421 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04780 Viun-Chr3 55110573 55123468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04780 653 872 Miscellaneous Gene Families AT5G08390 21.875 2.39e-09 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Viun3g04780 WD40 0.054 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04780 - - vun:114177037 1667.9