Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04757 ATGTCATCAAGTGGAACCCTTTGGAGCTATGAGGAAGAAAAGGCATTTGAGAATGCCATAGCTATGCATTGGATTGAAGAAGCCTCAAAAGAGCAATGGGAGAAAATTGCTTCAGCAGTTCCCACCAAAAGCATGGAAGAAGTGAAGCAGCATTACCAGGTTCTAGTGGAAGATGTAAGTGCAATAGAAGCAGGTCACATACCCTTCCCCAACTATGCTTCTGAGGAAACCACCTCTTCAAATAAGGACTTCCATGCCTCTTCCAAGGCCACAAATTCAGATAAAAGATCAAATTGTAACTTTGGAACTGGTTTTTCTGGTTTAGGCCATGACTCCACCACTCACAGTAGTGGTAAAGGAGCCTTGTCAAGGTCATCAGAACAAGAAAGGAGAAAAGGAATTCCATGGACTGAGGAGGAACACAGGTTATTTTTGCTTGGTCTAGACAAGTTTGGAAAAGGAGATTGGAGAAGCATTTCAAGAAACTTTGTGATATCTAGGACTCCCACACAAGTGGCAAGCCATGCACAGAAGTACTTCATAAGGTTGAATTCCATGAATAGGGACAGAAGAAGATCTAGTATCCATGACATAACTAGTGTGAACAATGGAGATGTGGCTAGCAATCAAGCACCAATTACAGGGCAACATAGTAGCACAGTTTCTTCAAGTACAATGGGTGTAGGACAATCACTGAAACACAGAGTGCAGGGTCATATACCACCTGGTTTAGGCATGTATGGAACACCAGTTGGACACCCTGTTGCTGCTCCTCCAGGGCACATGGCCTCTGCAGTTGGCACTCCTGTCATGCTTCCACCTGGACCCCACCCTCATGCTCATGCTCATGCTCATCCTCATCCTCATCCTCATCCTCATCCACCTTATGTTCTTCCTCTTGCTTACCCTATGGCACCTCCTACAATGCATCAATGA 936 0.4487 MSSSGTLWSYEEEKAFENAIAMHWIEEASKEQWEKIASAVPTKSMEEVKQHYQVLVEDVSAIEAGHIPFPNYASEETTSSNKDFHASSKATNSDKRSNCNFGTGFSGLGHDSTTHSSGKGALSRSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVASNQAPITGQHSSTVSSSTMGVGQSLKHRVQGHIPPGLGMYGTPVGHPVAAPPGHMASAVGTPVMLPPGPHPHAHAHAHPHPHPHPHPPYVLPLAYPMAPPTMHQ 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04757 311 SMART sant 132 182 IPR001005 -
Viun3g04757 311 SMART sant 4 58 IPR001005 -
Viun3g04757 311 MobiDBLite consensus disorder prediction 200 225 - -
Viun3g04757 311 SUPERFAMILY Homeodomain-like 130 185 IPR009057 -
Viun3g04757 311 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Viun3g04757 311 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Viun3g04757 311 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Viun3g04757 311 FunFam Transcription factor SRM1 1 69 - -
Viun3g04757 311 CDD SANT 8 56 IPR001005 -
Viun3g04757 311 ProSiteProfiles SANT domain profile. 1 52 IPR017884 -
Viun3g04757 311 SUPERFAMILY Homeodomain-like 8 62 IPR009057 -
Viun3g04757 311 MobiDBLite consensus disorder prediction 73 123 - -
Viun3g04757 311 Gene3D - 1 69 - -
Viun3g04757 311 NCBIfam myb-like DNA-binding domain, SHAQKYF class 132 182 IPR006447 GO:0003677
Viun3g04757 311 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Viun3g04757 311 MobiDBLite consensus disorder prediction 73 133 - -
Viun3g04757 311 MobiDBLite consensus disorder prediction 273 292 - -
Viun3g04757 311 CDD SANT 135 180 IPR001005 -
Viun3g04757 311 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
Viun3g04757 311 Gene3D - 134 186 - -
Viun3g04757 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Viun3g04757 311 FunFam transcription factor MYB1R1 134 185 - -
Viun3g04757 311 PANTHER TRANSCRIPTION FACTOR KUA1 4 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04757 Viun-Chr3 54947733 54949323 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun3g04757 Myb_DNA-binding 9.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04757 - - gmx:100812196 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04757 3 54947733 54949323 Viun3g04757 3 54947733 54949323 ECH