Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04750 ATGAGCTGGCGCAGGGTGTTGAACTCAGCACAGGCCCTGGCCGCGCACACCTTCCTGTTGTGCTTCACTCTCTTCCTCGTTCTCAAGCTTGATCACGATCTCTCTTGTTCTTGGTGGGTAGTATTTTTACCTCTTTGGATGTTCCATGGTGTTGTGGCTCGAGGAAGGTTTTCATTACCTGCACCATCTGCTCCACGTAATCGAAATTGGGCACCATGTCATGCCGTCGTTGCTACGCCGTTGCTTATTGCGTTTGAATTGCTCCTTTGTATATATCTTGAGAGCATATATGATCTCGGCTATGCAGCAGTTGATCTAAAGATAGTGTTTCTTCCCTTACTAACATTTGAAATCATTATTCTCATTGACAATTTCAGGATGTGTAAGGCTCTGATGCCAGGGGATGAAGAAAACTTGAGTGACGAGGCAATATGGGAAACTCTTCCTCACTTCTGGGTTGCAATTTCTATGGTGTTCTTCATTGCTGCTACAGTCTTCACACTCCTAAAACTGAGCGGTAACTATTTCCCCCCTAAATGTGATGTAGGTGCTCTCGGCTGGTGGGACCTTTTTATTAACTTTGCTATCGCCGAATGCTTTTCTTTCCTTGTATGTACAAAGTGGTCCAATCCTGTAATTCATAGAAATTCAAGAGAAGCCAGTAGTTCATCTTCAACTACTATTAGATATCTTGACTGGAACAGTGGTTTAGTAGTTTCTACAGATGAAAATCGACCACAGGGGAGAATCTGTAGCCTACAAGACATAGGGGGGCATTTCATGAAAGTACCAATTATTGTATTCCAGGTTCTTCTCTGTATGCATCTAGAGGGAACACCTGCTTCTGCTGTAAATATACCACTTCCAGTTATTTTCTCTCCGCTTTTTGTACTTCAAGGAGCTGGAGTACTTTTATCTGCATCTAAATTAGCGGAGAAACTTGTGCTTCTCCTACGAAGTGGAGCTGCTGCAGGAATTTATTTTAGATTTTCTTCAAGAGTTCATGATTGCTTGGGGTTCTTGCATCATGGTTCCAGATTGTTGGGTTGGTGGTCAATTGATGAAGGGAGTCGGGAAGAACAAGCACGAATATACCATGAGGGAGCATCTGGGTATAATACGTTCTGTGGTTATCCTCCTGAGATTGTTAAGAAAATGCCGAAAAAGGAACTCGCTGAGGAGGTTTGGAGACTCCAGGCAGCTCTTGGAGAACAGACTGAAATTACAAAATTCAGCCAACAGGAGTATGAAAGACTTCAAAATGAGAAAGTGTTGTGCAGGATTTGTTTTGAGGGAGAGATTAATGTTGTATTGCTCCCATGTAGGCATCGCGTCCTTTGCAGCACTTGCTCAGAGAAGTGTAAGAAGTGCCCGATTTGCCGTGACTCTATTGCTGAGCGTTTGCCTGTATATGATGTTTAG 1422 0.4332 MSWRRVLNSAQALAAHTFLLCFTLFLVLKLDHDLSCSWWVVFLPLWMFHGVVARGRFSLPAPSAPRNRNWAPCHAVVATPLLIAFELLLCIYLESIYDLGYAAVDLKIVFLPLLTFEIIILIDNFRMCKALMPGDEENLSDEAIWETLPHFWVAISMVFFIAATVFTLLKLSGNYFPPKCDVGALGWWDLFINFAIAECFSFLVCTKWSNPVIHRNSREASSSSSTTIRYLDWNSGLVVSTDENRPQGRICSLQDIGGHFMKVPIIVFQVLLCMHLEGTPASAVNIPLPVIFSPLFVLQGAGVLLSASKLAEKLVLLLRSGAAAGIYFRFSSRVHDCLGFLHHGSRLLGWWSIDEGSREEQARIYHEGASGYNTFCGYPPEIVKKMPKKELAEEVWRLQAALGEQTEITKFSQQEYERLQNEKVLCRICFEGEINVVLLPCRHRVLCSTCSEKCKKCPICRDSIAERLPVYDV 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04750 473 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 402 471 IPR013083 -
Viun3g04750 473 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 473 - -
Viun3g04750 473 Pfam Transmembrane Fragile-X-F protein 28 298 IPR019396 -
Viun3g04750 473 Pfam Zinc finger, C3HC4 type (RING finger) 423 465 - -
Viun3g04750 473 SUPERFAMILY RING/U-box 417 468 - -
Viun3g04750 473 SMART ring_2 426 460 IPR001841 -
Viun3g04750 473 ProSiteProfiles Zinc finger RING-type profile. 426 461 IPR001841 -
Viun3g04750 473 FunFam Kinesin-like protein KIN-7D, mitochondrial 403 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04750 Viun-Chr3 54930996 54938741 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04750 1 473 C3H Transcription Factor Family AT1G73950 71.882 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04750 - - gmx:100791390 887.486