Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04726 ATGGACGAAACGATGAACAAGAATAAGAAGAATAAGAAGAAGCGCGATAAAAAACGACCTCGGGATGTTGCTATCGAGGAGCCTCCAGAAGAAGAGGAGAATGTGAATGAGACAGATAGCGACGGAGAATCCTCGAGGAAGAAGAATAAGAAGAAGAAGAAGGAAGTGGAGGGAGAAAGTGAAGTGGAAGAGAGAAAGGTGAAGAACAATGGTGGGTCTGGTATTATGAGCTCCGAGTCATTTGAATCTCTGGGATTGTCTGAACCTACTTATAAGGCCATCATGGATATGGGATTCCAGCACATGACTCAGATTCAAGCGAGAGCGATTCCACCTCTCTTGATTGGAAAAGACGTGCTTGGTGCTGCAAGGACTGGTTCTGGAAAAACTCTCGCCTTCTTAATTCCTGCTGTGGAGCTGTTGTACAATGTTAAGTTTACACCTCGTAATGGAGCTGGTGTTGTTGTTATATGCCCAACTAGAGAGCTTGCAATACAGACACATGCTGTGGCCAAGGAGCTTCTCAAGTATCATTCACAAACTCTTGGGTTGGTTATCGGGGGTTCAACTAGAAAACTTGAAGCTGAACGCCTAGCCAAAGGGATAAATCTATTGGTAGCAACTCCTGGTCGTCTTCTAGATCATCTTCAAAATACAAAAGGATTCATATACAAAAACTTGAAGTGCCTCATGATTGATGAAGCTGACAGAATCTTAGAAGCAAACTTTGAGGAGGAAATGAAACAGATTATTAAGATCCTTCCAAAGAGTAGGCAAACAGCTTTATTTTCCGCTACACAAACAAAGAAGGTCGAGGATCTTGCCCGTTTGTCATTTCAGACTACTCCCATCTATATTGATGTGGATGACGGGAGAACCAAGGTCACCAACGAAGGGTTGCTTCAGGGTTATGTTGTTGTACCTTGTGCCAAGCGATTTATTGTTCTCTATTCCTTTTTGAAGAGACACCAGTCAAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCACACAGACATTCTTAATCTCATTCAATTGAATTGCTCAAGTATTCATGGAAAACAAAAGCAGCAGACCCGGACAACTACCTTTTTTGATTTTTGCAAAGCAGAAAAGGGGATCTTATTATGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGCTGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCTAAGGAATATATCCACAGGGTCGGTAGAACAGCTCGCGGTGAAGGCGGAAAAGGAAATGCTTTGCTTTTCCTAATTCCTGAAGAATTGCAATTTCTCCGCTACCTGAAGGCAGCCAAGGTCCCTGTTAAAGAGTATGCATATGATGAAAAGAAGGTTGCAAACGTACAATCTCACCTGGAGAGTTTGGTTGTCAACAATTTTTATTTGAACAAGATGGCGAAAGAAGCCTATAGATCATACATATTAGCTTATAATTCACATTCCATGAAGGATATATTCAATGTTCACCGTCTTGATTTTCAGGCTGTTGCATCTTCGTTTTGTTTCTCAAACCCACCAAACGTTACACTGAACATAAACAGCAGTAAGCAAAGGAAGAAAATGCGTAAAGTTGATGGAAGTAGACACGGATTCAGCGACAACAATCCTTATGGAAAGAGAAACGCAGACGACAAGCGGCAGTTTGTGAGGCACTAG 1695 0.4195 MDETMNKNKKNKKKRDKKRPRDVAIEEPPEEEENVNETDSDGESSRKKNKKKKKEVEGESEVEERKVKNNGGSGIMSSESFESLGLSEPTYKAIMDMGFQHMTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYNVKFTPRNGAGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSTRKLEAERLAKGINLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKSRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRTKVTNEGLLQGYVVVPCAKRFIVLYSFLKRHQSKKVMVFFSSCNSVKFHTDILNLIQLNCSSIHGKQKQQTRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYAYDEKKVANVQSHLESLVVNNFYLNKMAKEAYRSYILAYNSHSMKDIFNVHRLDFQAVASSFCFSNPPNVTLNINSSKQRKKMRKVDGSRHGFSDNNPYGKRNADDKRQFVRH 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04726 564 CDD SF2_C_DEAD 300 430 - -
Viun3g04726 564 PANTHER RNA HELICASE 34 467 - -
Viun3g04726 564 MobiDBLite consensus disorder prediction 528 564 - -
Viun3g04726 564 Pfam Helicase conserved C-terminal domain 315 419 IPR001650 -
Viun3g04726 564 MobiDBLite consensus disorder prediction 1 81 - -
Viun3g04726 564 Pfam Domain of unknown function (DUF4217) 461 521 IPR025313 -
Viun3g04726 564 MobiDBLite consensus disorder prediction 39 68 - -
Viun3g04726 564 Pfam DEAD/DEAH box helicase 103 274 IPR011545 GO:0003676|GO:0005524
Viun3g04726 564 Gene3D - 23 289 IPR027417 -
Viun3g04726 564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 287 IPR027417 -
Viun3g04726 564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 225 434 IPR027417 -
Viun3g04726 564 SMART DUF4217_3 460 523 IPR025313 -
Viun3g04726 564 CDD DEADc_DDX18 90 287 IPR044773 GO:0003724|GO:0005524
Viun3g04726 564 SMART helicmild6 339 420 IPR001650 -
Viun3g04726 564 SMART ultradead3 98 303 IPR014001 -
Viun3g04726 564 Gene3D - 300 540 IPR027417 -
Viun3g04726 564 FunFam RNA helicase 296 526 - -
Viun3g04726 564 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 110 285 IPR014001 -
Viun3g04726 564 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 231 239 IPR000629 -
Viun3g04726 564 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 79 107 IPR014014 GO:0003724
Viun3g04726 564 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 312 459 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04726 Viun-Chr3 54630858 54635909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04726 79 438 Eukaryotic Initiation Factors Gene Family AT3G13920 31.593 4.54e-48 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04726 K13179 - gmx:100798885 999.964