Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04723 ATGGAGCCTATGGACATAATCGGCAAATCAAAAGAAGACGCTTCGCTTCCTAAAGCGACAATGACAAAAATTATTAAAGAAATGTTACCCCCAGATGTACGTGTAGCAAGAGATGCTCAAGATCTATTAATCGAGTGTTGTGTAGAGTTTATAAACCTCATCTCGTCAGAATCCAATGAAGTCTGCAACAGAGAGGAAAAACGGACAATTGCACCCGAGCATGTATTGAAGGCTCTACAGGTTCTTGGATTTGGTGAGTACATTGAAGAAGTTTATGCAGCATACGAACAACACAAAATGGAGACCATGGACTCTTTAAAGGGTGGTAAATGGAGCAATGTGGCTGAGATGACCGAGGAAGAAGCATTAGCAGAGCAGCAAAGGATGTTTGCAGAGGCCCGTGCTAGGATGAACGGTGGAGGCATTACTTCCAAGCAGCCAGATACTGACCAAAGTTTAGATAGCTGA 468 0.4316 MEPMDIIGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCNREEKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKMETMDSLKGGKWSNVAEMTEEEALAEQQRMFAEARARMNGGGITSKQPDTDQSLDS 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04723 155 MobiDBLite consensus disorder prediction 136 155 - -
Viun3g04723 155 SUPERFAMILY Histone-fold 12 140 IPR009072 GO:0046982
Viun3g04723 155 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Viun3g04723 155 PANTHER PROTEIN DR1 HOMOLOG 1 154 IPR044255 -
Viun3g04723 155 Coils Coil 114 134 - -
Viun3g04723 155 Gene3D Histone, subunit A 5 140 IPR009072 GO:0046982
Viun3g04723 155 FunFam Negative cofactor 2 beta 6 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04723 Viun-Chr3 54605167 54610122 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04723 1 151 CCAAT-DR1 Transcription Factor Family AT5G23090 82.468 9.79e-91 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Viun3g04723 CBFD_NFYB_HMF 3.2e-22 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04723 K21751 - gmx:100807912 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04723 3 54605167 54610122 Viun3g04723 3 54605167 54610122 ECH