Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04722 ATGGAGCCTATGGACATAATCGGCAAATCAAAAGAAGACGCTTCGCTTCCTAAAGCGACAATGACAAAAATTATTAAAGAAATGTTACCCCCAGATGTACGTGTAGCAAGAGATGCTCAAGATCTATTAATCGAGTGTTGTGTAGAGTTTATAAACCTCATCTCGTCAGAATCCAATGAAGTCTGCAACAGAGAGGAAAAACGGACAATTGCACCCGAGCATGTATTGAAGGCTCTACAGGTTCTTGGATTTGGTGAGTACATTGAAGAAGTTTATGCAGCATACGAACAACACAAAATGGAGACCATGCAGGACTCTTTAAAGGGTGGTAAATGGAGCAATGTGGCTGAGATGACCGAGGAAGAAGCATTAGCAGAGCAGCAAAGGATGTTTGCAGAGGCCCGTGCTAGGATGAACGGTGGAGGCATTACTTCCAAGCAGCCAGATACTGACCAAAGTTTAGATAGCTGA 471 0.4331 MEPMDIIGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCNREEKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKMETMQDSLKGGKWSNVAEMTEEEALAEQQRMFAEARARMNGGGITSKQPDTDQSLDS 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04722 156 Coils Coil 115 135 - -
Viun3g04722 156 MobiDBLite consensus disorder prediction 137 156 - -
Viun3g04722 156 Gene3D Histone, subunit A 5 141 IPR009072 GO:0046982
Viun3g04722 156 PANTHER PROTEIN DR1 HOMOLOG 1 155 IPR044255 -
Viun3g04722 156 FunFam Negative cofactor 2 beta 6 142 - -
Viun3g04722 156 SUPERFAMILY Histone-fold 12 141 IPR009072 GO:0046982
Viun3g04722 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04722 Viun-Chr3 54605167 54610149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04722 1 152 CCAAT-DR1 Transcription Factor Family AT5G23090 83.117 3.11e-93 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Viun3g04722 CBFD_NFYB_HMF 3.3e-22 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04722 K21751 - gmx:100807912 292.352