Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04719 ATGGCTGGGGGACGAAGGAGGAGGCATCACTTCGGCAGAATCCATGCATTCACGTGTGGGAAAGCTTCCATGAAGGAAGAACATTCACTGATTGGAGGCCCTGGGTTCTCAAGGAAAGTGTATTGCAATGACCCTGAACGTGCCACCGCGAGTCTTATCAATTATGGAGACAATTATGTCAGAACAACTAAGTATACATTGGCCACGTTCCTCCCCAAGTCCCTGTTTGAACAGTTCAGGAGGGTTGCAAATTTCTACTTCCTCGTTTGTGCAGTTTTGTCTTTCTTTCCGGTGTCTCCTTACTCTGGAGTCAGTAATGTTGTCCCTCTACTGGTTGTGGTAGCTGCCACAATGGCCAAAGAGTTCATTGAAGATTTTAGGAGAAAACAACAGGATATAGAGATGAATAACAGAAAAGTTAAAGTGCATGATGGAGGTGGTGATTTTTCCTATTCTAAATGGAGGGATTTGAAAGTTGGAGATATAGTGAGGGTGGAAAAGGATGAATTTTTTCCTGCTGATCTCATCTTACTTTCGTCAAATTATGATGATGCAATTTGCTATGTTGAGACTATGAATCTTGATGGAGAGACAAATCTGAAACTGAAACAAGCATTGGAAGAAACTTCAAAGGTGCAAGAAGACTCGAGCTTTCAAAATTTCAGGGCTGTCATCACATGTGAAGATCCAAATGCAAATTTGTACACATTTGTTGGAAGTATGGAGATTGAGGATCAACAGCATCCTCTTGCACCTCAACAGCTACTTCTCAGGGACTCTAAGCTGAGGAACACAGATTTTGTTTATGGTGTGGTAATCTTTACTGGACATGATACAAAGGTTATGCAGAATGCAACAGACCCGCCATCCAAGAGAAGCAAAATTGAGAAAAGGATGGATAAGATTATCTACTGCCTCTTCTTTCTACTTATTTTGATTTCTTTCATTGGGTCCATATTCTTTGGGATTACAACAGATGATGACATTGAAAATGGAAGAATGAAGAGATGGTACCTTAGACCAGATGATACCGATATTTTCTTTGACCCTAATGAACCAGTAGCTGCTGCAATTCTGCATTTCTTGACAGCACTTATGTTGTACAGTTACTTGATTCCAATTTCATTGTATGTATCCATTGAAATTGTGAAGGTTCTTCAAAGCATTTTCATCAACCAGGATGTGAAAATGTATCATGCGGAAACTGACAAGCCAGCACATGCTCGTACATCAAATTTGAATGAAGAACTTGGCCAAGTGGACACCATACTTTCAGACAAGACAGGAACTTTGACTTGTAATTCTATGGAATTTATCAAGTGTTCTATTGCTGGGGTTGCTTATGGTCGAGGAGTTACAGAAGTTGAGAGAGCTCTATCTACGAGACATGAATCAGATTTTGGTAAAGAGTTGAGAGAAAACAACAACAGTGCAAAGGTTCGTGAATCAAAGACATCCGTTAAAGGGTTTAACTTTATGGATGAAAGGATCATGAATGGAAATTGGATCAAAGAACCCAATGCCAATGTAATCCAGAACTTCCTAAGGCTTCTGGCTGTATGCCACACTGCAATACCAGAAGTTGATGAAGGAACTGGGAAGGTTTCATATGAAGCTGAATCACCGGATGAGGCAGCTTTTGTGATTGCAGCCAGGGAACTTGGATTTGAATTTTATGAAAGGACACATACAACTATTTCACTGCGTGAATTAGACCCCATAACAGGCCTGAAAGTTCAAAGGTCCTACAAATTCTTGAATGTATTAGAGTTTAGTAGTGCAAGAAAGCGGATGTCAGTAATTGTAAGAGATGAGGAGGGGAAACTGTTGCTTCTCAGCAAAGGCGCTGACAGTGTAATGTTTGAACGAATTGCAAAGAATGGAAGGCAATTTGAAGAGAACACAAAGCAGCACATCAGTGAATATGCTGATTCTGGTTTGAGGACCTTGATACTTGCATATCGTGAGCTTAATGAAGAAGAGTACAATCAATTTAATAAAGAGTTTACACAGGCCAAGAACTTAGTGAGTGCAGACCAGGAGCAGATTGTTGAGAGCATAATACAAAATATTGAGAAGGATTTAATTCTTCTTGGTGCTACTGCAGTTGAAGACAAGCTACAAGATGGGGTTCCTGAATGCATTGACAAGCTAGCACAGGCTGGGATTAAGCTATGGGTTTTAACTGGTGATAAAATGGAGACAGCAATTAATATAGGATTTGCTTGTAGTTTACTCAGGCAAGGAATGAAACAAATTATAATTAGCTCAGATACTCCAGAAAACAAATCATTGGAGAAAATGGAGGACAAGGCTGCTGCTGATGCGGCAATTAAGGCAAGTGTTATTCGTCAACTAAGGGAGGCAAGTGCATTACTTTCTTCATCAGATGAATATGAGGCCTTAGCCCTGATCATTGATGGGAAGTCTCTTACATATGCACTAGAAGATGATGTAAATGATTTGTTTCTTGAACTTGCCATTGGCTGCGCATCTGTTATCTGCTGTCGTTCCTCTCCCAAGCAGAAAGCACTAGTTACAAGACTGGTGAAGATGAGAACTGGTAGTACAACACTAGCTATTGGAGATGGGGCAAATGATGTTGGAATGCTCCAAGAAGCTGACATTGGAATTGGTATCAGTGGTGTGGAAGGCATGCAGGCAGTTATGTCAAGTGACATTGCAATAGCCCAATTCCGGTTTCTTGAGCGGTTGCTTCTTGTGCACGGACATTGGTGTTACAGAAGGATATCATCAATGATCTGCTACTTCTTTTACAAGAACATTGCCTTCGGCTTCACTCTGTTCTTCTTTGAGATATATGCCTCATTCTCCGGCCAACCTGCATACAATGACTGGTTCATGTCACTATATAATGTCTTCTTCACTTCACTTCCTGTAATTGCATTGGGAGTGTTTGATCAAGATGTCTCTTCCAAACTTTGTCTCAAGTTTCCATTGTTATACCAAGAAGGCATTCAAAACATTCTATTTAGCTGGAAACGGATCATCGGTTGGATAGTTAATGGAGTTGTGACTTCTGCCATCATATTCTTCTTCTGCATGCGTACCATGGAACATCAAGCATTCCGCAAAGGAGGTCAAGTGGTGGAGCTGGAAGTTCTCGGTGCCACCATGTACACCTGTGTTGTGTGGGTGGTGAATTGCCAAATGGCATTATCTATCAGTTACTTCACTTATGTACAGCATATATTCATCTGGGGAAGCATCATATTCTGGTATATATTCCTCTTGGCATATGGAGCCATAGACCCTTCCTTCTCCACCACAGCCTATAAGGTTTTAGTTGAAGCTCTTGCACCAGCACCATATTTCTGGATCATCACTTTGCTCATTCTCATTGCTTCCCTTCTTCCATACTTCGTCTATGCTTCCATCCAAATGCGTTTCTTCCCCATGTACCATCAAATGATTCAGTGGATAAGGAAGGACGGCCAAACAAGTGATCCAGAATACTGCAATGTGGTAAGACAGCGATCGATAAGAAACACCACAGTTGGATTCACAGCTCGTTTGGAAGCATCCAAACGGTTCAATGCATCCAGAAGAGTTGAATCATACACAAAACCTGAAACAACATCCGTGAGATTTGAATCATCCAAACGTTCTGAAGGGCTGTCTGAGGACCGGTAA 3654 0.4116 MAGGRRRRHHFGRIHAFTCGKASMKEEHSLIGGPGFSRKVYCNDPERATASLINYGDNYVRTTKYTLATFLPKSLFEQFRRVANFYFLVCAVLSFFPVSPYSGVSNVVPLLVVVAATMAKEFIEDFRRKQQDIEMNNRKVKVHDGGGDFSYSKWRDLKVGDIVRVEKDEFFPADLILLSSNYDDAICYVETMNLDGETNLKLKQALEETSKVQEDSSFQNFRAVITCEDPNANLYTFVGSMEIEDQQHPLAPQQLLLRDSKLRNTDFVYGVVIFTGHDTKVMQNATDPPSKRSKIEKRMDKIIYCLFFLLILISFIGSIFFGITTDDDIENGRMKRWYLRPDDTDIFFDPNEPVAAAILHFLTALMLYSYLIPISLYVSIEIVKVLQSIFINQDVKMYHAETDKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGVAYGRGVTEVERALSTRHESDFGKELRENNNSAKVRESKTSVKGFNFMDERIMNGNWIKEPNANVIQNFLRLLAVCHTAIPEVDEGTGKVSYEAESPDEAAFVIAARELGFEFYERTHTTISLRELDPITGLKVQRSYKFLNVLEFSSARKRMSVIVRDEEGKLLLLSKGADSVMFERIAKNGRQFEENTKQHISEYADSGLRTLILAYRELNEEEYNQFNKEFTQAKNLVSADQEQIVESIIQNIEKDLILLGATAVEDKLQDGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMKQIIISSDTPENKSLEKMEDKAAADAAIKASVIRQLREASALLSSSDEYEALALIIDGKSLTYALEDDVNDLFLELAIGCASVICCRSSPKQKALVTRLVKMRTGSTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRFLERLLLVHGHWCYRRISSMICYFFYKNIAFGFTLFFFEIYASFSGQPAYNDWFMSLYNVFFTSLPVIALGVFDQDVSSKLCLKFPLLYQEGIQNILFSWKRIIGWIVNGVVTSAIIFFFCMRTMEHQAFRKGGQVVELEVLGATMYTCVVWVVNCQMALSISYFTYVQHIFIWGSIIFWYIFLLAYGAIDPSFSTTAYKVLVEALAPAPYFWIITLLILIASLLPYFVYASIQMRFFPMYHQMIQWIRKDGQTSDPEYCNVVRQRSIRNTTVGFTARLEASKRFNASRRVESYTKPETTSVRFESSKRSEGLSEDR 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04719 1217 Pfam Cation transport ATPase (P-type) 533 623 - -
Viun3g04719 1217 SUPERFAMILY HAD-like 419 916 IPR036412 -
Viun3g04719 1217 SUPERFAMILY Calcium ATPase, transmembrane domain M 45 1139 IPR023298 -
Viun3g04719 1217 Gene3D - 115 286 - -
Viun3g04719 1217 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Viun3g04719 1217 PRINTS P-type cation-transporting ATPase superfamily signature 861 880 - -
Viun3g04719 1217 PRINTS P-type cation-transporting ATPase superfamily signature 748 758 - -
Viun3g04719 1217 CDD P-type_ATPase_APLT_Dnf-like 57 1021 - -
Viun3g04719 1217 NCBIfam phospholipid-translocating P-type ATPase 55 1146 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Viun3g04719 1217 MobiDBLite consensus disorder prediction 1202 1217 - -
Viun3g04719 1217 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 482 699 IPR023299 GO:0000166
Viun3g04719 1217 Gene3D - 558 673 IPR023299 GO:0000166
Viun3g04719 1217 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 39 1152 - -
Viun3g04719 1217 SFLD Haloacid Dehalogenase 406 912 - -
Viun3g04719 1217 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Viun3g04719 1217 FunFam Phospholipid-transporting ATPase 116 286 - -
Viun3g04719 1217 NCBIfam HAD-IC family P-type ATPase 827 943 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun3g04719 1217 Pfam Phospholipid-translocating ATPase N-terminal 40 105 IPR032631 -
Viun3g04719 1217 MobiDBLite consensus disorder prediction 1190 1217 - -
Viun3g04719 1217 FunFam Phospholipid-transporting ATPase 540 698 - -
Viun3g04719 1217 Pfam Phospholipid-translocating P-type ATPase C-terminal 889 1139 IPR032630 -
Viun3g04719 1217 FunFam Phospholipid-transporting ATPase 698 901 - -
Viun3g04719 1217 SFLD p-type atpase 406 912 IPR044492 -
Viun3g04719 1217 Gene3D - 694 901 IPR023214 -
Viun3g04719 1217 SUPERFAMILY Calcium ATPase, transduction domain A 140 285 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04719 Viun-Chr3 54572992 54579083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04719 10 1187 Primary Pumps ATPases AT3G25610 70.364 0.0 1769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04719 K01530 - gmx:100799312 2123.59